Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V9W59_RS11640 Genome accession   NZ_CP146762
Coordinates   2318172..2318507 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1041     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2313172..2323507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS11620 (V9W59_11620) gcvT 2313651..2314748 (-) 1098 WP_024427995.1 glycine cleavage system aminomethyltransferase GcvT -
  V9W59_RS11625 (V9W59_11625) - 2315310..2316980 (+) 1671 WP_024422967.1 SNF2-related protein -
  V9W59_RS11630 (V9W59_11630) - 2316995..2317792 (+) 798 WP_024422968.1 YqhG family protein -
  V9W59_RS11635 (V9W59_11635) - 2317974..2318138 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  V9W59_RS11640 (V9W59_11640) sinR 2318172..2318507 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  V9W59_RS11645 (V9W59_11645) - 2318575..2319375 (-) 801 WP_024422970.1 TasA family protein -
  V9W59_RS11650 (V9W59_11650) - 2319430..2320002 (-) 573 WP_024422971.1 signal peptidase I -
  V9W59_RS11655 (V9W59_11655) tapA 2320055..2320582 (-) 528 WP_024422972.1 amyloid fiber anchoring/assembly protein TapA -
  V9W59_RS11660 (V9W59_11660) - 2320882..2321160 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  V9W59_RS11665 (V9W59_11665) - 2321195..2321389 (-) 195 WP_149126478.1 YqzE family protein -
  V9W59_RS11670 (V9W59_11670) comGG 2321449..2321832 (-) 384 WP_073206276.1 competence type IV pilus minor pilin ComGG -
  V9W59_RS11675 (V9W59_11675) comGF 2321829..2322356 (-) 528 WP_335343444.1 competence type IV pilus minor pilin ComGF -
  V9W59_RS11680 (V9W59_11680) comGE 2322268..2322582 (-) 315 WP_149126477.1 competence type IV pilus minor pilin ComGE -
  V9W59_RS11685 (V9W59_11685) comGD 2322566..2323012 (-) 447 WP_149126476.1 competence type IV pilus minor pilin ComGD -
  V9W59_RS11690 (V9W59_11690) comGC 2323005..2323298 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=944443 V9W59_RS11640 WP_024422969.1 2318172..2318507(+) (sinR) [Bacillus safensis strain JJ1041]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=944443 V9W59_RS11640 WP_024422969.1 2318172..2318507(+) (sinR) [Bacillus safensis strain JJ1041]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946