Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V9W63_RS16620 Genome accession   NZ_CP146760
Coordinates   3390590..3391279 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JJ334     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3385590..3396279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W63_RS16585 (V9W63_16585) - 3385787..3386269 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V9W63_RS16590 (V9W63_16590) flgM 3386284..3386550 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V9W63_RS16595 (V9W63_16595) - 3386620..3387039 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  V9W63_RS16600 (V9W63_16600) comFC 3387113..3387802 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  V9W63_RS16605 (V9W63_16605) - 3387808..3388092 (-) 285 WP_007407481.1 competence protein ComFB -
  V9W63_RS16610 (V9W63_16610) comFA 3388150..3389535 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  V9W63_RS16615 (V9W63_16615) - 3389644..3390492 (-) 849 WP_007407483.1 DegV family protein -
  V9W63_RS16620 (V9W63_16620) degU 3390590..3391279 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V9W63_RS16625 (V9W63_16625) degS 3391356..3392519 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  V9W63_RS16630 (V9W63_16630) - 3392742..3393389 (+) 648 WP_007407485.1 YigZ family protein -
  V9W63_RS16635 (V9W63_16635) - 3393394..3394575 (+) 1182 WP_338683763.1 LCP family protein -
  V9W63_RS16640 (V9W63_16640) - 3394674..3395750 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=944337 V9W63_RS16620 WP_003219701.1 3390590..3391279(-) (degU) [Bacillus velezensis strain JJ334]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=944337 V9W63_RS16620 WP_003219701.1 3390590..3391279(-) (degU) [Bacillus velezensis strain JJ334]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1