Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOK_RS07925 Genome accession   NZ_CP170434
Coordinates   1563542..1564315 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t315     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1558542..1569315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS07890 - 1558795..1559565 (-) 771 WP_000473699.1 isoprenyl transferase -
  ACFIOK_RS07895 frr 1559938..1560492 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOK_RS07900 pyrH 1560511..1561233 (-) 723 WP_000057330.1 UMP kinase -
  ACFIOK_RS07905 tsf 1561370..1562251 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOK_RS07910 - 1562286..1562399 (-) 114 WP_001789890.1 hypothetical protein -
  ACFIOK_RS07915 rpsB 1562433..1563200 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOK_RS07920 - 1563399..1563491 (-) 93 WP_031788481.1 hypothetical protein -
  ACFIOK_RS07925 codY 1563542..1564315 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOK_RS07930 hslU 1564340..1565743 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOK_RS07935 hslV 1565809..1566354 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOK_RS07940 xerC 1566351..1567247 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  ACFIOK_RS07945 trmFO 1567664..1568971 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=944335 ACFIOK_RS07925 WP_000055337.1 1563542..1564315(-) (codY) [Staphylococcus aureus strain t315]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=944335 ACFIOK_RS07925 WP_000055337.1 1563542..1564315(-) (codY) [Staphylococcus aureus strain t315]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428