Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V9W60_RS14930 Genome accession   NZ_CP146759
Coordinates   2881118..2881759 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ61     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2876118..2886759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS14895 (V9W60_14895) - 2877246..2877677 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  V9W60_RS14900 (V9W60_14900) - 2877677..2878018 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  V9W60_RS14905 (V9W60_14905) - 2878011..2879489 (+) 1479 WP_058336867.1 Na+/H+ antiporter subunit D -
  V9W60_RS14910 (V9W60_14910) - 2879496..2879975 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  V9W60_RS14915 (V9W60_14915) - 2879975..2880256 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  V9W60_RS14920 (V9W60_14920) mnhG 2880240..2880614 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  V9W60_RS14925 (V9W60_14925) - 2880705..2881094 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  V9W60_RS14930 (V9W60_14930) comA 2881118..2881759 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  V9W60_RS14935 (V9W60_14935) comP 2881840..2884152 (-) 2313 WP_058336868.1 ATP-binding protein Regulator
  V9W60_RS14940 (V9W60_14940) comX 2884206..2884376 (-) 171 WP_074041927.1 competence pheromone ComX -
  V9W60_RS14945 (V9W60_14945) - 2884373..2885287 (-) 915 WP_035701208.1 polyprenyl synthetase family protein -
  V9W60_RS14950 (V9W60_14950) degQ 2885439..2885579 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  V9W60_RS14955 (V9W60_14955) - 2886085..2886438 (+) 354 WP_338704229.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=944256 V9W60_RS14930 WP_007500477.1 2881118..2881759(-) (comA) [Bacillus altitudinis strain JJ61]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=944256 V9W60_RS14930 WP_007500477.1 2881118..2881759(-) (comA) [Bacillus altitudinis strain JJ61]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718