Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V7A39_RS04175 Genome accession   NZ_CP146749
Coordinates   825112..826368 (-) Length   418 a.a.
NCBI ID   WP_341785093.1    Uniprot ID   -
Organism   Lactococcus petauri strain L3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 820112..831368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A39_RS04145 (V7A39_04145) ald 820865..821971 (+) 1107 WP_019292776.1 alanine dehydrogenase -
  V7A39_RS04150 (V7A39_04150) - 822091..823050 (+) 960 WP_019292775.1 PhoH family protein -
  V7A39_RS04155 (V7A39_04155) - 823052..823525 (+) 474 WP_019292774.1 NUDIX hydrolase -
  V7A39_RS04160 (V7A39_04160) ybeY 823535..824023 (+) 489 WP_019292773.1 rRNA maturation RNase YbeY -
  V7A39_RS04165 (V7A39_04165) - 824007..824468 (+) 462 WP_019292772.1 diacylglycerol kinase family protein -
  V7A39_RS04170 (V7A39_04170) - 824471..825115 (-) 645 WP_019292771.1 ComF family protein -
  V7A39_RS04175 (V7A39_04175) comFA 825112..826368 (-) 1257 WP_341785093.1 DEAD/DEAH box helicase Machinery gene
  V7A39_RS04180 (V7A39_04180) - 826423..827046 (+) 624 WP_019292769.1 YigZ family protein -
  V7A39_RS04185 (V7A39_04185) - 827059..828081 (+) 1023 WP_019293557.1 DUF475 domain-containing protein -
  V7A39_RS04190 (V7A39_04190) - 828116..829138 (-) 1023 WP_341785094.1 alpha/beta hydrolase -
  V7A39_RS04195 (V7A39_04195) - 829456..830235 (+) 780 WP_019292766.1 formate/nitrite transporter family protein -
  V7A39_RS04200 (V7A39_04200) glyQ 830249..831217 (+) 969 WP_019292765.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 48072.01 Da        Isoelectric Point: 10.1835

>NTDB_id=944104 V7A39_RS04175 WP_341785093.1 825112..826368(-) (comFA) [Lactococcus petauri strain L3]
MNELYGRLLLQKELSKIPDKATLFDSMHDISRTVIMCNRCGKKSKKKEVLLPVGAYYCPHCIQMGRVRSDEKLYHLPQED
FLAASFLNWQGKLTAPQQYISDTLVKLHQQQKTVLVQAVTGVGKTEMIYQMIDNTLKKGKAVALTSPRIDVCLELYYRLK
RDFSCPISLLHGKSEKYSRSPLVIATTHQLMRFRHAFDLLIFDEVDAFPFPDNDMLSFALTQARKPSSSLIYLTATTTDN
LERQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMVKKQRESGFPLLIFVPEIRLGEKLNQDLQSSFPHEKIAFVAS
TSLERLEAVERFRQGNISILVSTTILERGVTFPKVDVFVFQSHHHNFTRSSLIQIAGRVGRSTERPDGKVFFFHLGKITA
MLEAYKNIRNMNKAGGFQ

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=944104 V7A39_RS04175 WP_341785093.1 825112..826368(-) (comFA) [Lactococcus petauri strain L3]
ATGAATGAATTATATGGTAGACTCCTTTTACAAAAAGAATTGTCGAAAATCCCAGACAAAGCAACACTTTTTGATAGTAT
GCACGATATTTCAAGAACAGTGATTATGTGCAATCGCTGTGGCAAAAAAAGTAAGAAAAAAGAGGTCCTACTCCCCGTTG
GTGCTTATTATTGTCCCCATTGTATTCAGATGGGACGTGTTCGCTCGGATGAAAAACTTTATCATCTTCCTCAGGAGGAT
TTTTTAGCAGCTTCTTTTCTAAACTGGCAGGGAAAACTCACAGCCCCTCAGCAATATATATCTGATACTCTAGTCAAATT
ACATCAGCAACAAAAAACGGTGCTGGTACAGGCTGTCACGGGTGTAGGAAAAACTGAAATGATTTATCAGATGATTGATA
ACACCCTTAAAAAAGGAAAAGCTGTAGCTTTAACTAGCCCTCGTATTGATGTCTGTCTAGAACTCTACTATCGCTTAAAG
CGAGATTTTTCTTGTCCCATCTCGCTTTTACACGGAAAAAGTGAGAAATACAGCCGCTCGCCACTCGTAATTGCGACGAC
ACATCAGCTTATGCGTTTTCGTCATGCCTTTGACTTACTCATTTTTGATGAGGTTGATGCTTTTCCATTTCCAGATAATG
ACATGCTTTCTTTTGCACTGACTCAAGCTCGTAAACCTTCTTCAAGCTTGATTTATCTTACTGCAACAACCACCGATAAT
TTGGAAAGACAAGTCAAGTTGGGGCAAATCGAAAAGTTACAACTTCCCCGACGTTTTCATGGTTTTCCATTGGTACTCCC
ACAATTTTTTTGGCAGAGCAAGTTTTATAAAATGGTCAAAAAACAACGCGAATCTGGTTTCCCATTACTTATCTTTGTCC
CTGAAATAAGACTGGGAGAAAAACTGAACCAAGACTTACAGAGTAGTTTTCCTCATGAAAAAATTGCCTTTGTTGCTTCA
ACGAGTCTTGAACGCTTAGAGGCTGTGGAACGTTTTCGCCAGGGCAATATTTCTATCCTTGTCTCAACGACTATTTTAGA
ACGTGGTGTAACTTTTCCTAAGGTTGACGTTTTTGTATTTCAAAGTCATCACCATAATTTCACAAGATCAAGCCTCATCC
AAATTGCTGGACGAGTAGGTCGAAGTACCGAAAGACCTGACGGCAAAGTGTTTTTCTTTCATTTAGGAAAAATAACAGCA
ATGTTGGAAGCTTATAAAAATATCAGAAATATGAATAAGGCAGGAGGTTTCCAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(97-236)

Helicase conserved C-terminal domain (Helicase_C)

(274-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

57.143

93.78

0.536
  comFA/cflA Streptococcus mitis SK321

51.054

100

0.522
  comFA/cflA Streptococcus pneumoniae TIGR4

50.585

100

0.517
  comFA/cflA Streptococcus pneumoniae Rx1

50.585

100

0.517
  comFA/cflA Streptococcus pneumoniae D39

50.585

100

0.517
  comFA/cflA Streptococcus pneumoniae R6

50.585

100

0.517
  comFA/cflA Streptococcus mitis NCTC 12261

50.117

100

0.512
  comFA Bacillus subtilis subsp. subtilis str. 168

37.215

100

0.39
  comFA Latilactobacillus sakei subsp. sakei 23K

38.539

94.976

0.366