Detailed information NTG0943972

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: V7A37_RS04050
• Genome accession: NZ_CP146741
• Coordinates: 807912..809168 (-)
• Length: 418 a.a.
• NCBI ID: WP_206888838.1
• Uniprot ID: -
• Organism: Lactococcus petauri strain L6
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 802912..814168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A37_RS04020 (V7A37_04020)	ald	803665..804771 (+)	1107	WP_206888834.1	alanine dehydrogenase	-
V7A37_RS04025 (V7A37_04025)	-	804891..805850 (+)	960	WP_004257953.1	PhoH family protein	-
V7A37_RS04030 (V7A37_04030)	-	805852..806325 (+)	474	WP_198494734.1	NUDIX hydrolase	-
V7A37_RS04035 (V7A37_04035)	ybeY	806335..806823 (+)	489	WP_019292773.1	rRNA maturation RNase YbeY	-
V7A37_RS04040 (V7A37_04040)	-	806807..807268 (+)	462	WP_019292772.1	diacylglycerol kinase family protein	-
V7A37_RS04045 (V7A37_04045)	-	807271..807915 (-)	645	WP_206888836.1	ComF family protein	-
V7A37_RS04050 (V7A37_04050)	comFA	807912..809168 (-)	1257	WP_206888838.1	DEAD/DEAH box helicase	Machinery gene
V7A37_RS04055 (V7A37_04055)	-	809223..809846 (+)	624	WP_019292769.1	YigZ family protein	-
V7A37_RS04060 (V7A37_04060)	-	809859..810881 (+)	1023	WP_019293557.1	DUF475 domain-containing protein	-
V7A37_RS04065 (V7A37_04065)	-	810916..811938 (-)	1023	WP_034999659.1	alpha/beta hydrolase	-
V7A37_RS04070 (V7A37_04070)	-	812256..813035 (+)	780	WP_019292766.1	formate/nitrite transporter family protein	-
V7A37_RS04075 (V7A37_04075)	glyQ	813049..814017 (+)	969	WP_165719545.1	glycine--tRNA ligase subunit alpha	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 47941.77 Da
• Isoelectric Point: 10.1309

>NTDB_id=943972 V7A37_RS04050 WP_206888838.1 807912..809168(-) (comFA) [Lactococcus petauri strain L6]
MNELYGRLLLQKELSKIPDKATLFDSMHDISRTVIMCNRCGKKSKKKEVLLPVGAYYCPHCIQMGRVRSDEKLYHLPQED
FLAASFLNWQGKLTAPQQYISDTLVKLHQQQKTVLVQAVTGAGKTEMIYQMIDNTLKKGKAVGLTSPRIDVCLELYYRLK
RDFSCPISLLHGKSEKYSRSPLVIATTHQLMRFRHAFDLVILDEVDAFPFPDNDMLSFALTQARKPSSSLIYLTATTTNN
LEKQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMVKKQRESGFPLLIFVPEIRLGEKLNQDLQSSFPHEEIAFVAS
TSLERLEAVERFRQGNISILVSTTILERGVTFPKVDVFVFQSHHHNFTRSSLIQIAGRVGRSTERPDGKVFFFHLGKTTA
MLEAYKNIRNMNKAGGFQ

Nucleotide

• Length: 1257 bp

>NTDB_id=943972 V7A37_RS04050 WP_206888838.1 807912..809168(-) (comFA) [Lactococcus petauri strain L6]
ATGAATGAATTATATGGTAGACTCCTTTTACAAAAAGAATTGTCGAAAATCCCAGACAAAGCAACACTTTTTGATAGTAT
GCACGATATTTCAAGAACAGTGATTATGTGCAATCGCTGTGGCAAAAAAAGTAAGAAAAAAGAGGTCCTACTCCCCGTTG
GTGCTTATTATTGTCCCCATTGTATTCAGATGGGACGTGTTCGCTCGGATGAAAAACTTTATCATCTTCCTCAGGAGGAT
TTTTTAGCAGCTTCTTTTCTAAACTGGCAGGGAAAACTCACAGCCCCTCAGCAATATATATCTGATACTCTAGTCAAATT
ACATCAGCAACAAAAAACGGTGCTGGTGCAGGCTGTCACGGGTGCAGGAAAAACTGAAATGATTTATCAGATGATTGATA
ACACCCTTAAAAAAGGAAAAGCTGTAGGTTTAACTAGTCCTCGTATTGATGTCTGTCTAGAACTCTACTATCGCTTAAAG
CGAGATTTTTCTTGTCCCATCTCGCTTTTACACGGAAAAAGTGAGAAATACAGCCGCTCGCCACTCGTAATTGCGACGAC
ACATCAGCTTATGCGTTTTCGTCATGCCTTTGACTTAGTCATTCTTGATGAGGTTGATGCTTTTCCATTTCCAGATAATG
ACATGCTCTCTTTTGCACTGACTCAAGCTCGTAAACCTTCTTCAAGCTTGATTTATCTTACTGCAACAACCACCAATAAT
TTGGAAAAACAAGTCAAGTTGGGGCAAATCGAAAAGTTACAACTTCCCCGACGTTTTCATGGTTTTCCATTGGTACTCCC
ACAATTTTTTTGGCAGAGCAAGTTTTATAAAATGGTCAAAAAACAACGCGAATCTGGTTTCCCATTACTTATCTTTGTCC
CTGAAATAAGACTGGGAGAAAAACTGAACCAAGACTTACAGAGTAGTTTTCCTCATGAAGAAATTGCCTTTGTTGCTTCA
ACGAGTCTTGAACGCTTAGAGGCTGTGGAACGTTTTCGCCAGGGCAATATTTCTATCCTTGTCTCAACGACTATTTTAGA
ACGTGGTGTAACTTTTCCTAAGGTTGACGTTTTTGTATTTCAAAGTCATCACCATAATTTCACAAGATCAAGCCTCATCC
AAATTGCTGGACGAGTAGGTCGAAGTACCGAAAGACCTGACGGCAAAGTGTTTTTCTTTCATTTAGGAAAAACAACAGCA
ATGTTGGAAGCTTATAAAAATATCAGAAATATGAATAAGGCAGGAGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (274-382)

• Type III restriction enzyme, res subunit (ResIII) (97-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	57.143	93.78	0.536
comFA/cflA	Streptococcus pneumoniae TIGR4	50.82	100	0.519
comFA/cflA	Streptococcus pneumoniae Rx1	50.82	100	0.519
comFA/cflA	Streptococcus pneumoniae D39	50.82	100	0.519
comFA/cflA	Streptococcus pneumoniae R6	50.82	100	0.519
comFA/cflA	Streptococcus mitis SK321	50.351	100	0.514
comFA/cflA	Streptococcus mitis NCTC 12261	49.415	100	0.505
comFA	Bacillus subtilis subsp. subtilis str. 168	37.443	100	0.392
comFA	Latilactobacillus sakei subsp. sakei 23K	39.043	94.976	0.371