Detailed information NTG0943927

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: V7A38_RS04280
• Genome accession: NZ_CP146739
• Coordinates: 837562..838818 (-)
• Length: 418 a.a.
• NCBI ID: WP_341784751.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain L7
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 832562..843818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A38_RS04245 (V7A38_04245)	rpmA	832683..832967 (+)	285	WP_004257956.1	50S ribosomal protein L27	-
V7A38_RS04250 (V7A38_04250)	-	833317..834423 (+)	1107	WP_341784750.1	alanine dehydrogenase	-
V7A38_RS04255 (V7A38_04255)	-	834541..835500 (+)	960	WP_004257953.1	PhoH family protein	-
V7A38_RS04260 (V7A38_04260)	-	835502..835975 (+)	474	WP_014024618.1	NUDIX hydrolase	-
V7A38_RS04265 (V7A38_04265)	ybeY	835985..836473 (+)	489	WP_014024619.1	rRNA maturation RNase YbeY	-
V7A38_RS04270 (V7A38_04270)	-	836457..836918 (+)	462	WP_014024620.1	diacylglycerol kinase family protein	-
V7A38_RS04275 (V7A38_04275)	-	836921..837565 (-)	645	WP_014024621.1	ComF family protein	-
V7A38_RS04280 (V7A38_04280)	comFA	837562..838818 (-)	1257	WP_341784751.1	DEAD/DEAH box helicase	Machinery gene
V7A38_RS04285 (V7A38_04285)	-	838873..839496 (+)	624	WP_004257938.1	YigZ family protein	-
V7A38_RS04290 (V7A38_04290)	-	839510..840532 (+)	1023	WP_341784752.1	DUF475 domain-containing protein	-
V7A38_RS04295 (V7A38_04295)	-	840564..841586 (-)	1023	WP_014024624.1	alpha/beta hydrolase	-
V7A38_RS04300 (V7A38_04300)	-	841905..842684 (+)	780	WP_014024625.1	formate/nitrite transporter family protein	-
V7A38_RS04305 (V7A38_04305)	glyQ	842698..843666 (+)	969	WP_004257927.1	glycine--tRNA ligase subunit alpha	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 48002.87 Da
• Isoelectric Point: 9.8847

>NTDB_id=943927 V7A38_RS04280 WP_341784751.1 837562..838818(-) (comFA) [Lactococcus garvieae strain L7]
MDELYGRLLLQKELTKLPDKATLFDGMQDVSKTVMMCNRCGKKIKKKEVLLPVGAYYCPHCIQMGRVRSDEKLYHLPQED
FSAASFLNWQGKLTASQQHVSDSLVKLQQQQKTVLVQAVTGAGKTEMIYQSIDNTLKKGKAVGLTSPRIDVCLELYHRLK
RDFSCPISLLHGKSEKYSRSPLVIATTHQLMRFRHAFDLLILDEVDAFPFPDNEMLYFELAQARKPSSILIYLTATTTDN
LEKQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMIKKQRESGFPLLIFVPEIRQGEKLCQDLQSNFPHEEIAFVAS
TSLERLEAVERFRQGNISILVSTTILERGVTFPKVDVFVFQSHHHYFTRSSLIQIAGRVGRSTERPEGKVFFFHLGKTTA
MLEAYKNIRNMNKAGGFL

Nucleotide

• Length: 1257 bp

>NTDB_id=943927 V7A38_RS04280 WP_341784751.1 837562..838818(-) (comFA) [Lactococcus garvieae strain L7]
ATGGATGAATTATATGGTAGACTCCTTTTACAAAAAGAATTGACGAAACTTCCAGATAAAGCAACACTTTTTGATGGGAT
GCAAGATGTTTCCAAAACAGTGATGATGTGCAACCGCTGTGGCAAAAAGATCAAGAAAAAAGAGGTCCTTCTCCCTGTTG
GTGCTTATTATTGTCCCCATTGTATTCAAATGGGACGTGTTCGCTCGGATGAAAAACTTTACCACCTTCCCCAGGAGGAT
TTTTCAGCAGCTTCTTTTCTCAACTGGCAGGGAAAACTCACAGCATCTCAGCAACATGTATCCGATAGCCTAGTCAAATT
GCAACAGCAACAAAAAACAGTACTGGTACAGGCGGTTACTGGTGCAGGAAAAACCGAAATGATTTATCAGAGCATTGATA
ACACCCTTAAAAAAGGAAAAGCTGTAGGTTTAACTAGCCCGCGTATTGATGTCTGTCTAGAGCTCTATCATCGCTTAAAG
AGAGATTTTTCTTGTCCCATCTCGCTTTTGCACGGAAAGAGTGAAAAATACAGCCGCTCGCCACTCGTAATCGCAACGAC
ACATCAGCTTATGCGTTTTCGCCATGCCTTTGACTTACTCATTCTTGATGAGGTGGATGCCTTTCCCTTTCCAGACAATG
AAATGCTTTATTTTGAGCTGGCTCAAGCCCGTAAGCCTTCTTCAATCTTGATTTATCTTACTGCAACCACCACCGATAAT
TTGGAAAAACAAGTCAAGTTAGGACAAATCGAGAAGCTACAGCTTCCACGACGTTTTCATGGTTTTCCTCTGGTACTCCC
GCAATTTTTTTGGCAAAGCAAATTTTACAAAATGATCAAAAAACAACGCGAGTCTGGTTTTCCCTTACTTATCTTTGTTC
CTGAAATAAGACAGGGAGAAAAACTCTGCCAAGATTTACAGAGTAATTTTCCTCATGAAGAAATTGCTTTTGTCGCGTCA
ACAAGTCTTGAACGCTTAGAGGCTGTGGAACGCTTTCGTCAGGGCAATATTTCTATCCTTGTCTCAACGACCATTTTAGA
ACGTGGTGTAACTTTCCCTAAGGTTGACGTTTTTGTGTTTCAAAGTCACCACCATTATTTCACAAGATCAAGCCTCATCC
AAATTGCCGGACGAGTAGGTCGAAGTACCGAAAGACCTGAGGGTAAGGTATTTTTCTTTCATTTAGGAAAAACTACAGCG
ATGTTGGAAGCCTATAAAAATATCAGAAATATGAATAAAGCAGGAGGGTTCCTATGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (274-382)

• Type III restriction enzyme, res subunit (ResIII) (92-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	57.143	93.78	0.536
comFA/cflA	Streptococcus mitis SK321	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae TIGR4	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae Rx1	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae D39	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae R6	52.347	100	0.533
comFA/cflA	Streptococcus mitis NCTC 12261	51.408	100	0.524
comFA	Bacillus subtilis subsp. subtilis str. 168	38.366	96.651	0.371
comFA	Latilactobacillus sakei subsp. sakei 23K	38.287	94.976	0.364