Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   RdKW20_RS09025 Genome accession   NZ_CP146693
Coordinates   1814519..1814866 (-) Length   115 a.a.
NCBI ID   WP_005693346.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809519..1819866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RdKW20_RS09000 (RdKW20_001708) otnI 1809986..1810762 (-) 777 WP_005693349.1 2-oxo-tetronate isomerase -
  RdKW20_RS09005 (RdKW20_001709) otnC 1810765..1811397 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  RdKW20_RS09010 (RdKW20_001710) otnK 1811394..1812635 (-) 1242 WP_005693348.1 3-oxo-tetronate kinase -
  RdKW20_RS09015 (RdKW20_001711) ltnD 1812638..1813543 (-) 906 WP_005665973.1 L-threonate dehydrogenase -
  RdKW20_RS09020 (RdKW20_001712) - 1813714..1814472 (+) 759 WP_015702000.1 DeoR/GlpR family DNA-binding transcription regulator -
  RdKW20_RS09025 (RdKW20_001713) comE1/comEA 1814519..1814866 (-) 348 WP_005693346.1 helix-hairpin-helix domain-containing protein Machinery gene
  RdKW20_RS09030 (RdKW20_001714) ispH 1815035..1815979 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RdKW20_RS09035 (RdKW20_001715) lspA 1815976..1816491 (-) 516 WP_005651632.1 signal peptidase II -
  RdKW20_RS09040 (RdKW20_001716) - 1816561..1818120 (-) 1560 WP_005693345.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12355.16 Da        Isoelectric Point: 8.0085

>NTDB_id=943854 RdKW20_RS09025 WP_005693346.1 1814519..1814866(-) (comE1/comEA) [Haemophilus influenzae strain Rd-KW20]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=943854 RdKW20_RS09025 WP_005693346.1 1814519..1814866(-) (comE1/comEA) [Haemophilus influenzae strain Rd-KW20]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTGACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCTTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

98.214

97.391

0.957
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383