Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   RdKW20_RS03010 Genome accession   NZ_CP146693
Coordinates   598550..598963 (+) Length   137 a.a.
NCBI ID   WP_005693727.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593550..603963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RdKW20_RS02990 (RdKW20_000558) - 594038..596632 (-) 2595 WP_005693721.1 penicillin-binding protein 1A -
  RdKW20_RS02995 (RdKW20_000559) comA 596731..597528 (+) 798 WP_005693722.1 competence protein A Machinery gene
  RdKW20_RS03000 (RdKW20_000560) comB 597529..598035 (+) 507 WP_005693724.1 competence protein ComB Machinery gene
  RdKW20_RS03005 (RdKW20_000561) comC 598032..598553 (+) 522 WP_005693726.1 competence protein ComC Machinery gene
  RdKW20_RS03010 (RdKW20_000562) comD 598550..598963 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  RdKW20_RS03015 (RdKW20_000563) comE 598973..600310 (+) 1338 WP_005693728.1 type IV pilus secretin PilQ family protein Machinery gene
  RdKW20_RS03020 (RdKW20_000564) - 600322..601008 (+) 687 WP_032828380.1 ComF family protein -
  RdKW20_RS03025 (RdKW20_000565) nfuA 601084..601680 (+) 597 WP_005693730.1 Fe-S biogenesis protein NfuA -
  RdKW20_RS03030 (RdKW20_000566) nudC 601747..602541 (+) 795 WP_005693731.1 NAD(+) diphosphatase -
  RdKW20_RS03035 (RdKW20_000567) - 602577..603167 (+) 591 WP_005693732.1 YjaG family protein -
  RdKW20_RS03040 (RdKW20_000568) - 603307..603579 (+) 273 WP_005630954.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15681.82 Da        Isoelectric Point: 4.5625

>NTDB_id=943838 RdKW20_RS03010 WP_005693727.1 598550..598963(+) (comD) [Haemophilus influenzae strain Rd-KW20]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=943838 RdKW20_RS03010 WP_005693727.1 598550..598963(+) (comD) [Haemophilus influenzae strain Rd-KW20]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

100

100

1
  comD Haemophilus influenzae 86-028NP

99.27

100

0.993