Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   RdKW20_RS03000 Genome accession   NZ_CP146693
Coordinates   597529..598035 (+) Length   168 a.a.
NCBI ID   WP_005693724.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 592529..603035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RdKW20_RS02980 (RdKW20_000556) - 592623..592952 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  RdKW20_RS02985 (RdKW20_000557) - 593105..593950 (-) 846 WP_005693720.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  RdKW20_RS02990 (RdKW20_000558) - 594038..596632 (-) 2595 WP_005693721.1 penicillin-binding protein 1A -
  RdKW20_RS02995 (RdKW20_000559) comA 596731..597528 (+) 798 WP_005693722.1 competence protein A Machinery gene
  RdKW20_RS03000 (RdKW20_000560) comB 597529..598035 (+) 507 WP_005693724.1 competence protein ComB Machinery gene
  RdKW20_RS03005 (RdKW20_000561) comC 598032..598553 (+) 522 WP_005693726.1 competence protein ComC Machinery gene
  RdKW20_RS03010 (RdKW20_000562) comD 598550..598963 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  RdKW20_RS03015 (RdKW20_000563) comE 598973..600310 (+) 1338 WP_005693728.1 type IV pilus secretin PilQ family protein Machinery gene
  RdKW20_RS03020 (RdKW20_000564) - 600322..601008 (+) 687 WP_032828380.1 ComF family protein -
  RdKW20_RS03025 (RdKW20_000565) nfuA 601084..601680 (+) 597 WP_005693730.1 Fe-S biogenesis protein NfuA -
  RdKW20_RS03030 (RdKW20_000566) nudC 601747..602541 (+) 795 WP_005693731.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19750.69 Da        Isoelectric Point: 8.5473

>NTDB_id=943836 RdKW20_RS03000 WP_005693724.1 597529..598035(+) (comB) [Haemophilus influenzae strain Rd-KW20]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=943836 RdKW20_RS03000 WP_005693724.1 597529..598035(+) (comB) [Haemophilus influenzae strain Rd-KW20]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCATTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae Rd KW20

100

100

1
  comB Haemophilus influenzae 86-028NP

98.81

100

0.988