Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V9385_RS18815 Genome accession   NZ_CP146691
Coordinates   4019721..4021934 (-) Length   737 a.a.
NCBI ID   WP_144189000.1    Uniprot ID   -
Organism   Pseudomonas juntendi strain L4046hy     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4014721..4026934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9385_RS18780 (V9385_18780) murB 4014954..4015973 (-) 1020 WP_009685204.1 UDP-N-acetylmuramate dehydrogenase -
  V9385_RS18785 (V9385_18785) - 4015970..4016434 (-) 465 WP_009685205.1 low molecular weight protein-tyrosine-phosphatase -
  V9385_RS18790 (V9385_18790) kdsB 4016434..4017198 (-) 765 WP_009685206.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9385_RS18795 (V9385_18795) - 4017195..4017380 (-) 186 WP_003247142.1 Trm112 family protein -
  V9385_RS18800 (V9385_18800) lpxK 4017424..4018425 (-) 1002 WP_144188996.1 tetraacyldisaccharide 4'-kinase -
  V9385_RS18805 (V9385_18805) - 4018425..4018859 (-) 435 WP_144188998.1 biopolymer transporter ExbD -
  V9385_RS18810 (V9385_18810) exbB 4018856..4019491 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9385_RS18815 (V9385_18815) comA 4019721..4021934 (-) 2214 WP_144189000.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9385_RS18820 (V9385_18820) - 4022077..4022589 (+) 513 Protein_3689 DUF2062 domain-containing protein -
  V9385_RS18825 (V9385_18825) - 4022593..4023372 (-) 780 WP_009681883.1 ABC transporter permease -
  V9385_RS18830 (V9385_18830) - 4023369..4024301 (-) 933 WP_144189004.1 ABC transporter ATP-binding protein -
  V9385_RS18835 (V9385_18835) - 4024448..4025071 (-) 624 WP_054913968.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79559.25 Da        Isoelectric Point: 10.0410

>NTDB_id=943809 V9385_RS18815 WP_144189000.1 4019721..4021934(-) (comA) [Pseudomonas juntendi strain L4046hy]
MRTGMLALALGLLCLGFLPALPPDGWLWVLAACAGVCLFSRGWPLGCFLLGLCWASWSAQQALDDRLAAALDGRTLWLEG
RVVGLPARTAHGVRFELEAARSRRAELPQRLQVSWFDGPPVRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPASYGWRDSLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACALAMGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AVLLPGFWLSFGAVATLVFCFSARLGAWRPWQAWTRAQWVIAIGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGEAGEALLWLAGGLLDVLFRVLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGDYDLGERVVLPTLRKLGVSHLDVMLISHAHADHAGGAG
AIQRGLPVERVIGGEALDDVQLQPCASGEQWEWDGVRFSLWRWAQGRSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATDAPRIDWLQSPHHGSRSSSSEGFMRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVVHDTAVQGALRLVLGGWG
EVEGMRGQRRFWRARGE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=943809 V9385_RS18815 WP_144189000.1 4019721..4021934(-) (comA) [Pseudomonas juntendi strain L4046hy]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGCTGTGCCTGGGCTTTCTTCCTGCATTGCCACCGGACGGGTGGTT
GTGGGTGCTGGCGGCTTGCGCTGGCGTCTGCCTGTTCAGCCGCGGGTGGCCATTGGGCTGTTTTCTGTTGGGGCTGTGCT
GGGCCAGCTGGTCTGCCCAGCAGGCCCTGGATGACCGGCTGGCGGCCGCTTTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCGGCGCGGACTGCGCACGGTGTGCGTTTCGAGCTGGAGGCCGCCCGTTCGCGCCGTGCCGAATT
GCCACAACGCCTGCAAGTCAGCTGGTTCGACGGGCCGCCGGTACGGGCCGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGTTGTTGAACCCGCATGGGCCGGACCGTGAAGCGCAGTTGCTGGCCCGGCGGGTCGGCGCTACCGGT
ACGGTGAAGGCGGGGCAGCTGCTGGCGCCGGCCAGCTATGGTTGGCGGGATTCGCTGCGCCAGCGCTTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCCGCGCTGGTGGCCCTGGTGCTCGGCGACGGGGCCGGCCTGGCGCGGGAAGATTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACTTGTTGGTCATTTCCGGCCAGCACATTGGCCTGGTTGCCGGTTTGCTCTACGGCCTG
GTCGCCGGGTTGGCCCGCTGGGGGCTGTGGCCCGCACGGCTGCCGTGGCTGCCCTCGGCGTGCGCGCTGGCCATGGGTGC
GGCACTGGCCTACGGCTGGCTGGCCGGCGCGGGGGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGGCTGCGTTTTCGGCACCTGGGGGCGTTCCTGCCACTGTTGCTGGCGCTGGTGGCCGTGTTGCTGGTCGAGCCGCTG
GCGGTGCTGCTTCCGGGCTTCTGGCTGTCGTTCGGCGCCGTGGCCACGCTGGTGTTTTGCTTCAGTGCCCGCCTGGGGGC
ATGGCGGCCATGGCAGGCCTGGACGCGGGCGCAGTGGGTGATTGCCATCGGTTTGTTGCCGGTGCTGCTGGCCGTGGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTGGTGGCGGTGCCATGGGTGAGCCTGGCGGTACTGCCGTTGGCCTTG
CTGGGCACCTTGCTGTTGCCGTTGGGTGAGGCTGGGGAGGCCTTGTTGTGGCTGGCAGGTGGCTTGCTGGACGTGCTGTT
TCGGGTGTTGGCGCTGGTTGCGCAGCAACGCCCGGCATGGGTGCCGCCAGCCCTGCCGCTATGGGCCTGGCTGCTGGTCT
GCCTGGGGGCTTTGCTGGTGCTGCTGCCCCGTGGTGTGCCGCTGCGAGGGTTGGGCGGGGTGATGCTGTTGGCCCTCTGG
GTGCCGCGCGAGCCGGTGCCTTTCGGGCAGGTGGAGGTCTGGCAACTGGACGTCGGCCAAGGCTTGGCGGTGCTGTTGCG
CACCCGGCATCACAATCTGCTGTATGACGCCGGGCCGGCGAGGGGCGACTACGACTTGGGGGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGTTGGGGGTGAGTCACCTGGACGTGATGCTGATCAGCCATGCCCACGCCGATCATGCCGGCGGTGCTGGG
GCGATACAGCGGGGTTTGCCGGTCGAGCGGGTTATCGGTGGGGAAGCGCTGGATGATGTTCAGTTGCAACCCTGTGCCAG
TGGCGAGCAATGGGAATGGGATGGTGTGCGCTTCTCGCTGTGGCGCTGGGCGCAAGGGCGCAGCAGTAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGCGAGCGGTTGTTGCTGGCCGGCGACATGGAGGCAGGGGCGGAGCGTGCCTGGCTG
GCGGCAACCGACGCGCCACGCATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCTTCCAGCGAGGGGTTCAT
GCGTGCCACGGCGCCGCGTGGGGTGCTGATATCGCGGGGGCGCAATAATAGCTTTGGGCACCCGCATGCGCAGGTGGTGG
AGCGGTACCGGCGGCATGGGGTGGTGGTGCATGACACGGCGGTGCAGGGGGCTTTGCGGTTGGTGCTGGGCGGGTGGGGG
GAGGTTGAGGGTATGCGGGGGCAGCGGCGGTTCTGGCGGGCTCGGGGGGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-649)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.921

98.1

0.578
  comA Ralstonia pseudosolanacearum GMI1000

35.807

100

0.373