Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V9385_RS18810 Genome accession   NZ_CP146691
Coordinates   4018856..4019491 (-) Length   211 a.a.
NCBI ID   WP_009685211.1    Uniprot ID   A0A7W2QUJ4
Organism   Pseudomonas juntendi strain L4046hy     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4013856..4024491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9385_RS18780 (V9385_18780) murB 4014954..4015973 (-) 1020 WP_009685204.1 UDP-N-acetylmuramate dehydrogenase -
  V9385_RS18785 (V9385_18785) - 4015970..4016434 (-) 465 WP_009685205.1 low molecular weight protein-tyrosine-phosphatase -
  V9385_RS18790 (V9385_18790) kdsB 4016434..4017198 (-) 765 WP_009685206.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9385_RS18795 (V9385_18795) - 4017195..4017380 (-) 186 WP_003247142.1 Trm112 family protein -
  V9385_RS18800 (V9385_18800) lpxK 4017424..4018425 (-) 1002 WP_144188996.1 tetraacyldisaccharide 4'-kinase -
  V9385_RS18805 (V9385_18805) - 4018425..4018859 (-) 435 WP_144188998.1 biopolymer transporter ExbD -
  V9385_RS18810 (V9385_18810) exbB 4018856..4019491 (-) 636 WP_009685211.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9385_RS18815 (V9385_18815) comA 4019721..4021934 (-) 2214 WP_144189000.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9385_RS18820 (V9385_18820) - 4022077..4022589 (+) 513 Protein_3689 DUF2062 domain-containing protein -
  V9385_RS18825 (V9385_18825) - 4022593..4023372 (-) 780 WP_009681883.1 ABC transporter permease -
  V9385_RS18830 (V9385_18830) - 4023369..4024301 (-) 933 WP_144189004.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=943808 V9385_RS18810 WP_009685211.1 4018856..4019491(-) (exbB) [Pseudomonas juntendi strain L4046hy]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGTQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=943808 V9385_RS18810 WP_009685211.1 4018856..4019491(-) (exbB) [Pseudomonas juntendi strain L4046hy]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCACACTTGCTCGGCCAGGTCTGGATATGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCGCTGCGCGCCGATTCGCCACTGGGTGAGATCCTCGCCGCGGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAAGAGGCAGCTTCGCGCGTCATTCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCACGCAGATGACCGCCAACGCCGCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2QUJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82