Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V9L16_RS20815 Genome accession   NZ_CP146624
Coordinates   4688285..4690510 (-) Length   741 a.a.
NCBI ID   WP_338722940.1    Uniprot ID   -
Organism   Pseudomonas tolaasii strain RSB 5.11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4683285..4695510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L16_RS20780 (V9L16_20780) murB 4683656..4684675 (-) 1020 WP_016969298.1 UDP-N-acetylmuramate dehydrogenase -
  V9L16_RS20785 (V9L16_20785) - 4684672..4685136 (-) 465 WP_016969297.1 low molecular weight protein-tyrosine-phosphatase -
  V9L16_RS20790 (V9L16_20790) kdsB 4685136..4685900 (-) 765 WP_016969296.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9L16_RS20795 (V9L16_20795) - 4685897..4686082 (-) 186 WP_003174668.1 Trm112 family protein -
  V9L16_RS20800 (V9L16_20800) lpxK 4686106..4687116 (-) 1011 WP_338722937.1 tetraacyldisaccharide 4'-kinase -
  V9L16_RS20805 (V9L16_20805) - 4687116..4687544 (-) 429 WP_016969294.1 biopolymer transporter ExbD -
  V9L16_RS20810 (V9L16_20810) exbB 4687541..4688176 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9L16_RS20815 (V9L16_20815) comA 4688285..4690510 (-) 2226 WP_338722940.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9L16_RS20820 (V9L16_20820) - 4690646..4691161 (+) 516 WP_338722942.1 DUF2062 domain-containing protein -
  V9L16_RS20825 (V9L16_20825) - 4691165..4692523 (-) 1359 WP_016969290.1 sensor histidine kinase -
  V9L16_RS20830 (V9L16_20830) - 4692510..4693238 (-) 729 WP_177007109.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80084.75 Da        Isoelectric Point: 10.2729

>NTDB_id=943477 V9L16_RS20815 WP_338722940.1 4688285..4690510(-) (comA) [Pseudomonas tolaasii strain RSB 5.11]
MRTGLFALGLGLLSLRFLPALPPLGWLLAMPVLALMLLPFRTHPLAFFLLGLSWACASAQSALEERLNPALEGQTRWVEG
RVVGLPQQTGTGVRFELADSRSRNAVLPKRIRVSWHAGPPVQSGERWRLALTFKRPLGLLNFHGFDYEAWLLAQRIGATA
SVKDGERLASARNAWRDPIRQRLMAVDAQGREAALVALVLGDGSGLGTDEWQILQDTGTVHLLVISGQHIGLLAGLIYGV
VAGLARYGCWPRTLPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWLPWLLALNGVLLLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSIWQVWTRPQWLIAIGLFPVLLVLGLPVSLSAPLANLFAVPWISLVVLPLAL
MGTALLAVPWLGEGLLWLAGGALDGLFALLALLAERSPAWVPAEVPLGYWWVSLAGAVLLLLPKGVPFRLLGWPMLLLSV
FPPREQVPHGQAEVVQLDVGQGQAVVVRIRHHTLLYDTGPRSGAIDLGARVVLPSLRKLGAGALDLMVLSHAHADHAGGA
AAVARGLPVKRVIGGETEGLPAFLDTQTCSSGERWVWDGVTFELWQWPGATSSNPRSCVLRIEANGEGLLLTGDIDRAAE
QAFLASPLAIRTDWLQAPHHGSRSSSSDAFLQQLAPDSVLISRGRGNAFGHPHPQVLARYQALGSQIHDSAEQGAVRVLL
GAFKPPTTARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=943477 V9L16_RS20815 WP_338722940.1 4688285..4690510(-) (comA) [Pseudomonas tolaasii strain RSB 5.11]
ATGAGAACAGGGTTGTTCGCGCTCGGACTTGGCTTGCTATCGCTGCGATTCTTGCCCGCATTGCCGCCGTTGGGCTGGCT
GCTGGCCATGCCGGTGCTGGCATTGATGCTGTTGCCTTTTCGCACCCATCCGCTGGCGTTTTTCCTGCTGGGTTTGAGCT
GGGCGTGTGCCAGTGCGCAATCGGCGCTGGAGGAGCGGCTCAACCCGGCGCTGGAGGGGCAGACACGCTGGGTGGAAGGG
CGCGTGGTCGGGTTACCGCAGCAAACGGGGACGGGCGTGCGCTTTGAATTGGCCGACAGCCGGTCACGCAACGCTGTTTT
ACCCAAGCGTATCCGGGTGTCCTGGCATGCAGGCCCGCCCGTGCAAAGCGGCGAGCGCTGGCGTCTGGCGCTGACGTTTA
AGCGGCCGCTGGGGTTGCTCAATTTTCATGGCTTTGACTATGAGGCGTGGTTGCTGGCCCAGCGTATCGGTGCAACGGCT
TCGGTGAAAGATGGCGAGCGACTGGCAAGCGCCCGAAATGCCTGGCGCGACCCGATTCGTCAGCGCTTGATGGCCGTGGA
TGCGCAAGGGCGTGAAGCCGCACTGGTGGCCTTGGTACTGGGGGACGGCTCCGGGCTGGGAACCGACGAGTGGCAAATTC
TGCAAGACACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCATATCGGGCTGCTGGCGGGGCTGATCTACGGGGTG
GTCGCAGGGCTTGCACGGTATGGCTGTTGGCCTCGCACGTTGCCCTGGCTGCCGTGGGCGTGTGGGCTCGCGTTTGCTGC
AGCATTGAGCTATGGCCTGTTGGCAGGGTTTGGCGTGCCGGTGCAGCGGGCGTGTGTGATGGTCGGGCTGGTGTTGCTCT
GGCGCCTGCGTTTTCGGCACCTGGGCGTCTGGCTGCCGTGGTTGCTGGCGCTCAACGGGGTATTGCTGCTTGAGCCATTG
GCCAGCTTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCGGTCGCGGTGCTGGTACTGGCTTTCGGCGGGCGGCTGGGGCC
GTGGAGCATCTGGCAGGTCTGGACCCGGCCACAGTGGCTGATCGCGATCGGTCTATTCCCGGTCCTGCTGGTGTTGGGGC
TGCCCGTCAGTCTCAGCGCGCCGCTGGCCAATTTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCTCTGGCGTTG
ATGGGTACCGCTCTGCTTGCCGTGCCGTGGCTGGGTGAAGGCTTGCTGTGGTTGGCCGGCGGGGCGCTGGATGGGCTGTT
CGCGCTGCTGGCGCTCTTGGCCGAGCGCTCACCGGCCTGGGTTCCGGCCGAGGTGCCGTTGGGGTACTGGTGGGTAAGCC
TGGCAGGCGCGGTGTTGTTGCTGTTGCCCAAGGGCGTGCCGTTTCGATTGCTGGGCTGGCCGATGCTGTTGCTGTCTGTT
TTTCCACCCCGAGAGCAGGTGCCCCATGGGCAGGCCGAGGTGGTGCAGCTGGATGTCGGTCAGGGGCAGGCCGTGGTTGT
GCGCATCCGCCACCACACCTTGTTGTATGACACGGGCCCGCGCTCGGGGGCGATTGACCTGGGCGCGCGCGTGGTACTGC
CATCGTTGAGAAAACTCGGGGCAGGGGCGCTGGACCTGATGGTACTCAGCCATGCCCACGCCGATCACGCTGGAGGAGCG
GCGGCAGTCGCCCGCGGGCTGCCGGTCAAGCGGGTCATCGGTGGTGAAACCGAGGGTTTGCCGGCGTTTCTCGACACTCA
AACCTGCTCCAGTGGCGAGCGGTGGGTGTGGGACGGGGTGACATTTGAGTTGTGGCAGTGGCCTGGGGCTACTAGCAGCA
ACCCGAGGTCTTGTGTGTTGCGCATCGAGGCCAATGGCGAAGGTCTGCTGCTGACGGGTGATATCGATCGCGCTGCCGAA
CAGGCGTTTCTGGCTTCACCGCTGGCCATTCGCACCGATTGGCTGCAAGCGCCTCATCATGGCAGTCGCAGTTCTTCATC
CGACGCTTTCCTGCAACAGCTTGCCCCCGACTCGGTGTTGATTTCACGGGGGCGCGGCAATGCGTTCGGCCATCCCCATC
CGCAAGTGTTGGCGCGCTATCAGGCACTGGGCAGCCAAATTCATGACAGCGCCGAGCAGGGCGCCGTGCGTGTGCTACTG
GGGGCGTTCAAACCACCGACTACTGCGCGCAGTCAACGTCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

37.089

100

0.395