Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V9L16_RS20810 Genome accession   NZ_CP146624
Coordinates   4687541..4688176 (-) Length   211 a.a.
NCBI ID   WP_016969293.1    Uniprot ID   A0A0W0I137
Organism   Pseudomonas tolaasii strain RSB 5.11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4682541..4693176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L16_RS20775 (V9L16_20775) - 4682922..4683593 (+) 672 WP_016969299.1 Bax inhibitor-1/YccA family protein -
  V9L16_RS20780 (V9L16_20780) murB 4683656..4684675 (-) 1020 WP_016969298.1 UDP-N-acetylmuramate dehydrogenase -
  V9L16_RS20785 (V9L16_20785) - 4684672..4685136 (-) 465 WP_016969297.1 low molecular weight protein-tyrosine-phosphatase -
  V9L16_RS20790 (V9L16_20790) kdsB 4685136..4685900 (-) 765 WP_016969296.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9L16_RS20795 (V9L16_20795) - 4685897..4686082 (-) 186 WP_003174668.1 Trm112 family protein -
  V9L16_RS20800 (V9L16_20800) lpxK 4686106..4687116 (-) 1011 WP_338722937.1 tetraacyldisaccharide 4'-kinase -
  V9L16_RS20805 (V9L16_20805) - 4687116..4687544 (-) 429 WP_016969294.1 biopolymer transporter ExbD -
  V9L16_RS20810 (V9L16_20810) exbB 4687541..4688176 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9L16_RS20815 (V9L16_20815) comA 4688285..4690510 (-) 2226 WP_338722940.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9L16_RS20820 (V9L16_20820) - 4690646..4691161 (+) 516 WP_338722942.1 DUF2062 domain-containing protein -
  V9L16_RS20825 (V9L16_20825) - 4691165..4692523 (-) 1359 WP_016969290.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23007.15 Da        Isoelectric Point: 6.8771

>NTDB_id=943476 V9L16_RS20810 WP_016969293.1 4687541..4688176(-) (exbB) [Pseudomonas tolaasii strain RSB 5.11]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=943476 V9L16_RS20810 WP_016969293.1 4687541..4688176(-) (exbB) [Pseudomonas tolaasii strain RSB 5.11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTATCACGCCTGAGCATCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTGGACAAGGAAAAACTCAAGGAGCTGCGCGCCAATTCGCCCCTGGGTGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCGCGGGTCATCCATGAAATGGAGCGTTATAT
CAATGCGCTCGGCACCATCGCCGCCATGGCTCCATTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCTTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCGGGTGGTATTTCCAAAGCATTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTATTTTTCCACCGTTTCCTGCAGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGGGATGTCGATTTCGTTGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0I137

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839