Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACFIOO_RS05345 Genome accession   NZ_CP170406
Coordinates   1122334..1124394 (+) Length   686 a.a.
NCBI ID   WP_054190217.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117334..1129394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS05320 rpe 1117809..1118453 (+) 645 WP_054190221.1 ribulose-phosphate 3-epimerase -
  ACFIOO_RS05325 - 1118460..1119101 (+) 642 WP_054190220.1 thiamine diphosphokinase -
  ACFIOO_RS05330 rpmB 1119481..1119669 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  ACFIOO_RS05335 - 1120112..1120486 (+) 375 WP_054190219.1 Asp23/Gls24 family envelope stress response protein -
  ACFIOO_RS05340 fakA 1120501..1122147 (+) 1647 WP_054191855.1 fatty acid kinase catalytic subunit FakA -
  ACFIOO_RS05345 recG 1122334..1124394 (+) 2061 WP_054190217.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFIOO_RS05350 fapR 1124857..1125429 (+) 573 WP_001548538.1 transcription factor FapR -
  ACFIOO_RS05355 plsX 1125434..1126420 (+) 987 WP_054190216.1 phosphate acyltransferase PlsX -
  ACFIOO_RS05360 fabD 1126413..1127339 (+) 927 WP_054190215.1 ACP S-malonyltransferase -
  ACFIOO_RS05365 fabG 1127332..1128066 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACFIOO_RS05370 - 1128372..1128605 (+) 234 WP_000426914.1 acyl carrier protein -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78385.98 Da        Isoelectric Point: 6.1562

>NTDB_id=943343 ACFIOO_RS05345 WP_054190217.1 1122334..1124394(+) (recG) [Staphylococcus aureus strain t21635]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTTPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQIQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=943343 ACFIOO_RS05345 WP_054190217.1 1122334..1124394(+) (recG) [Staphylococcus aureus strain t21635]
TTGGCGAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTACCAACTAGATATGAAGATAATACAGTGATTGATT
TGAACCAAGCAGAAGACCAATCTAACGTTACGATAGAAGGACAAGTATATACAACACCAGTAGTTGCATTTTTTGGAAGA
AACAAATCAAAATTAACCGTTCATTTAATGGTGAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCATATTTAAA
AAAGAAAATCGAATTAAATCAAACAATAACTGTTAAAGGTAAATGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGTACACAAATTCAAGAAAATGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGC
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTGGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTATTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTTGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCATTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGGTTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTGTTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCTCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTAAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTCGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

RecG wedge domain (RecG_wedge)

(16-175)

DEAD/DEAH box helicase (DEAD)

(267-422)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474
  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474
  recG Neisseria meningitidis strain C311

39.82

97.376

0.388