Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACFIOQ_RS05395 Genome accession   NZ_CP170404
Coordinates   1023990..1024979 (+) Length   329 a.a.
NCBI ID   WP_000219064.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t7960     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018990..1029979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOQ_RS05370 - 1020054..1020545 (+) 492 WP_000383814.1 DUF948 domain-containing protein -
  ACFIOQ_RS05375 - 1020619..1021665 (+) 1047 WP_111063777.1 hypothetical protein -
  ACFIOQ_RS05380 - 1021821..1021904 (+) 84 WP_031789490.1 hypothetical protein -
  ACFIOQ_RS05385 - 1022359..1023450 (+) 1092 WP_000066378.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ACFIOQ_RS05390 - 1023804..1023917 (+) 114 WP_111063775.1 hypothetical protein -
  ACFIOQ_RS05395 ccpA 1023990..1024979 (+) 990 WP_000219064.1 catabolite control protein A Regulator
  ACFIOQ_RS05400 - 1025077..1026246 (-) 1170 WP_001184001.1 acetoin utilization protein AcuC -
  ACFIOQ_RS05405 - 1026271..1026903 (-) 633 WP_001015992.1 hypothetical protein -
  ACFIOQ_RS05410 acsA 1027072..1028778 (+) 1707 WP_000862101.1 acetate--CoA ligase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36002.20 Da        Isoelectric Point: 5.7655

>NTDB_id=943244 ACFIOQ_RS05395 WP_000219064.1 1023990..1024979(+) (ccpA) [Staphylococcus aureus strain t7960]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=943244 ACFIOQ_RS05395 WP_000219064.1 1023990..1024979(+) (ccpA) [Staphylococcus aureus strain t7960]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGCCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCAAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462