Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   V8Z66_RS26350 Genome accession   NZ_CP146499
Coordinates   5043412..5043774 (-) Length   120 a.a.
NCBI ID   WP_338705158.1    Uniprot ID   -
Organism   Priestia aryabhattai strain HJ.T3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5038412..5048774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Z66_RS26340 (V8Z66_26340) - 5039155..5041785 (+) 2631 WP_049166295.1 DEAD/DEAH box helicase -
  V8Z66_RS26345 (V8Z66_26345) - 5042083..5043129 (+) 1047 WP_338705157.1 LysM peptidoglycan-binding domain-containing protein -
  V8Z66_RS26350 (V8Z66_26350) ssbB 5043412..5043774 (-) 363 WP_338705158.1 single-stranded DNA-binding protein Machinery gene
  V8Z66_RS26355 (V8Z66_26355) - 5043871..5044308 (+) 438 WP_028411996.1 YwpF-like family protein -
  V8Z66_RS26360 (V8Z66_26360) - 5044831..5045253 (+) 423 WP_338705159.1 helix-turn-helix transcriptional regulator -
  V8Z66_RS26365 (V8Z66_26365) fabZ 5045282..5045716 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V8Z66_RS26370 (V8Z66_26370) - 5045800..5046621 (-) 822 WP_028411994.1 flagellar hook-basal body protein -
  V8Z66_RS26375 (V8Z66_26375) - 5046645..5047469 (-) 825 WP_338705160.1 flagellar hook-basal body protein -
  V8Z66_RS26380 (V8Z66_26380) - 5047584..5048585 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.14 Da        Isoelectric Point: 8.0185

>NTDB_id=942921 V8Z66_RS26350 WP_338705158.1 5043412..5043774(-) (ssbB) [Priestia aryabhattai strain HJ.T3]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQKEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=942921 V8Z66_RS26350 WP_338705158.1 5043412..5043774(-) (ssbB) [Priestia aryabhattai strain HJ.T3]
ATGATTAACCATATTGTTCTTGTCGGAAGACTGACAAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAAAAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508