Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V6986_RS16220 Genome accession   NZ_CP146358
Coordinates   3176198..3176887 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain yw6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3171198..3181887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS16185 (V6986_16185) - 3171275..3171757 (-) 483 WP_024423619.1 flagellar protein FlgN -
  V6986_RS16190 (V6986_16190) flgM 3171776..3172039 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  V6986_RS16195 (V6986_16195) - 3172119..3172538 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  V6986_RS16200 (V6986_16200) - 3172595..3173281 (-) 687 WP_338592981.1 ComF family protein -
  V6986_RS16205 (V6986_16205) - 3173278..3173571 (-) 294 WP_039181811.1 competence protein ComFB -
  V6986_RS16210 (V6986_16210) comFA 3173621..3175018 (-) 1398 WP_143252282.1 DEAD/DEAH box helicase Machinery gene
  V6986_RS16215 (V6986_16215) - 3175139..3175981 (-) 843 WP_039181815.1 DegV family protein -
  V6986_RS16220 (V6986_16220) degU 3176198..3176887 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  V6986_RS16225 (V6986_16225) degS 3176952..3178127 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  V6986_RS16230 (V6986_16230) - 3178349..3179017 (+) 669 WP_012011434.1 YigZ family protein -
  V6986_RS16235 (V6986_16235) - 3179002..3180093 (+) 1092 WP_338592989.1 LCP family protein -
  V6986_RS16240 (V6986_16240) - 3180129..3181196 (-) 1068 WP_034660156.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=942761 V6986_RS16220 WP_008348273.1 3176198..3176887(-) (degU) [Bacillus safensis strain yw6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=942761 V6986_RS16220 WP_008348273.1 3176198..3176887(-) (degU) [Bacillus safensis strain yw6]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCAACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATTGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996