Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V6986_RS16210 Genome accession   NZ_CP146358
Coordinates   3173621..3175018 (-) Length   465 a.a.
NCBI ID   WP_143252282.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3168621..3180018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS16175 (V6986_16175) flgL 3168821..3169729 (-) 909 WP_041088047.1 flagellar hook-associated protein FlgL -
  V6986_RS16180 (V6986_16180) flgK 3169739..3171259 (-) 1521 WP_064497979.1 flagellar hook-associated protein FlgK -
  V6986_RS16185 (V6986_16185) - 3171275..3171757 (-) 483 WP_024423619.1 flagellar protein FlgN -
  V6986_RS16190 (V6986_16190) flgM 3171776..3172039 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  V6986_RS16195 (V6986_16195) - 3172119..3172538 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  V6986_RS16200 (V6986_16200) - 3172595..3173281 (-) 687 WP_338592981.1 ComF family protein -
  V6986_RS16205 (V6986_16205) - 3173278..3173571 (-) 294 WP_039181811.1 competence protein ComFB -
  V6986_RS16210 (V6986_16210) comFA 3173621..3175018 (-) 1398 WP_143252282.1 DEAD/DEAH box helicase Machinery gene
  V6986_RS16215 (V6986_16215) - 3175139..3175981 (-) 843 WP_039181815.1 DegV family protein -
  V6986_RS16220 (V6986_16220) degU 3176198..3176887 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  V6986_RS16225 (V6986_16225) degS 3176952..3178127 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  V6986_RS16230 (V6986_16230) - 3178349..3179017 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53132.04 Da        Isoelectric Point: 10.0057

>NTDB_id=942760 V6986_RS16210 WP_143252282.1 3173621..3175018(-) (comFA) [Bacillus safensis strain yw6]
MNMDKAMELMRQLHSRHLLTAETRCPQYKLDWLEEKGLVNRTPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKATECGFLYEWTGPQKVETYRAELTWQGELSKGQKRASEKMIEAIKSKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGMTIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVVIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSSGKLEAIKIPLRFHKQPLPVPTFHWIGHWKKKLKKNQLPRKVMNWMQ
RHIANKRRVLLFVPSIATMKKVTKILREHSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAANEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=942760 V6986_RS16210 WP_143252282.1 3173621..3175018(-) (comFA) [Bacillus safensis strain yw6]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATTTGCTCACCGCCGAAACAAGGTGCCCACA
GTACAAATTGGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGAACACCTGCGATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGGTCATGCATCATGATGGGAAAAGCAACTGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAAAAGTAGAAACATA
TCGAGCTGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAAAATGATTGAAGCTATCAAAA
GCAAATTTGATCTGCTTGTTTGGGCGGTTTGCGGGGCAGGGAAAACGGAGGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACCCCTAGAACAGATGTTGTGCTTGAACTCGAACCACGACTTAGAAAAGCATT
TCAAGGGATGACAATAGCCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAGATTGCACCGCTAGTGATCGCCACAACCC
ATCAGCTGATGAGGTACAAAAATGCATTTGATGTGGTCATTGTAGATGAAGTCGATGCCTTTCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTAGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCATAAACAACCATTACCCGTAC
CGACCTTTCATTGGATTGGACATTGGAAAAAGAAATTAAAAAAGAATCAGCTGCCCCGTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAAAGAAGAGTATTACTTTTTGTACCTTCAATCGCTACCATGAAGAAGGTAACGAAAATTCTTCG
AGAACACTCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCAGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTATTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTAGGCAGACACCCGGATTATTGTACAGGAGA
CGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTTAAAATGAATGATACGGCTG
CAAATGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(323-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.088

97.849

0.51