Detailed information NTG0942481

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSGK_RS01390
• Genome accession: NZ_CP146285
• Coordinates: 310392..312614 (+)
• Length: 740 a.a.
• NCBI ID: WP_374980352.1
• Uniprot ID: -
• Organism: Pseudomonas solani strain GK13
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 305392..317614

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSGK_RS01360 (PSGK_01360)	-	305466..305759 (-)	294	WP_021219516.1	hypothetical protein	-
PSGK_RS01365 (PSGK_01365)	-	305765..306352 (-)	588	WP_021219515.1	PilZ domain-containing protein	-
PSGK_RS01370 (PSGK_01370)	-	306448..307698 (+)	1251	WP_043244256.1	lipoprotein-releasing ABC transporter permease subunit	-
PSGK_RS01375 (PSGK_01375)	lolD	307700..308383 (+)	684	WP_162164733.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PSGK_RS01380 (PSGK_01380)	-	308385..309629 (+)	1245	WP_374980351.1	lipoprotein-releasing ABC transporter permease subunit	-
PSGK_RS01385 (PSGK_01385)	-	309711..310241 (-)	531	WP_021219511.1	DUF2062 domain-containing protein	-
PSGK_RS01390 (PSGK_01390)	comA	310392..312614 (+)	2223	WP_374980352.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSGK_RS01395 (PSGK_01395)	exbB	312687..313322 (+)	636	WP_031287691.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSGK_RS01400 (PSGK_01400)	-	313319..313759 (+)	441	WP_374980353.1	ExbD/TolR family protein	-
PSGK_RS01405 (PSGK_01405)	lpxK	313759..314763 (+)	1005	WP_374980354.1	tetraacyldisaccharide 4'-kinase	-
PSGK_RS01410 (PSGK_01410)	-	314805..314990 (+)	186	WP_021219506.1	Trm112 family protein	-
PSGK_RS01415 (PSGK_01415)	kdsB	314990..315754 (+)	765	WP_271660508.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSGK_RS01420 (PSGK_01420)	-	315754..316212 (+)	459	WP_374980355.1	low molecular weight protein-tyrosine-phosphatase	-
PSGK_RS01425 (PSGK_01425)	murB	316209..317228 (+)	1020	WP_374980356.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79239.65 Da
• Isoelectric Point: 10.1860

>NTDB_id=942481 PSGK_RS01390 WP_374980352.1 310392..312614(+) (comA) [Pseudomonas solani strain GK13]
MTGRLVALACGLASLRFMPGLPTGGWLLAAAVLGGVLLFTRLRLPGLFLLGGAWACFFAQQALDDRLAMALDGETRWLQG
QVVGLPQRGGGVVRFELEDAIAPGLRLPQRMRLSWYGGPEVRGGERWRLAVTLKRPRGLVNPHAFDYEAWLLARHTGATG
SVKAGEPLQRGSGPAAWRDHLRQGIESVPAHGRNGGIAALVLGDGSGVDSADWQLLQNTGTVHLMVISGQHVALLAAVLY
GAVALLARLGIWPRRLPWLPCACALAFVGSLGYGLLAGFDVPVQRSCLMTAIALLWRLRFRHLGVLRPLLVAFCVVLAAD
PLASLQAGFWLSFGAVALLVLIFAGRLGVPPWWRSWWRAQWTMGLALSPLLLAMALPISLSGPLANLVAVPWVSLVSVPL
SLLGTALQGVPGVGAGLLWLAGGSLELLFRLLGWIAEWIPAWQATVVPVWAWLLGILGCLLLIVPAGMPVRALGLALLLP
TLFPPVERPAWGRADIWLLDVGQGLSVLVRTREHALLYDAGARRGDFDMGERVVLPSLLGLGVRRLDQMLLSHADNDHAG
GAGAVMRGMPVARVVSGEPERLPASLGAEACRDQAWEWDGVRLRTWRWEVARTGNDRSCVLSVEARGERIHLTGDIGAQA
EAAWIASGESLHADWLLAPHHGSASSSSAALIGAVAPRGALITRGSHNAFGHPHPTVIARYRAAGAVIHDTAESGALLIR
LGEGDEVRGLRTQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=942481 PSGK_RS01390 WP_374980352.1 310392..312614(+) (comA) [Pseudomonas solani strain GK13]
ATGACGGGGAGGTTGGTTGCGCTGGCCTGCGGGTTGGCCTCGCTGCGTTTCATGCCGGGGTTGCCGACGGGCGGCTGGCT
TCTGGCGGCGGCGGTGCTGGGCGGCGTTCTTCTATTCACACGGCTACGGCTGCCGGGGCTGTTCCTCCTGGGTGGCGCCT
GGGCCTGCTTCTTTGCCCAGCAGGCCCTGGATGATCGCCTGGCCATGGCCCTGGATGGCGAGACTCGCTGGCTGCAAGGG
CAGGTTGTCGGCCTGCCGCAGCGGGGTGGTGGGGTGGTGCGTTTCGAGCTGGAGGATGCCATCGCGCCCGGATTGCGTTT
GCCGCAGCGCATGCGCCTGTCCTGGTATGGCGGGCCTGAGGTGCGCGGGGGCGAGCGTTGGCGCCTGGCGGTGACCCTGA
AGCGCCCCCGGGGCCTGGTGAACCCCCACGCGTTCGACTACGAAGCCTGGCTGCTGGCCCGCCATACCGGCGCCACTGGC
TCGGTGAAGGCGGGCGAGCCGCTGCAGCGGGGCAGTGGTCCGGCCGCCTGGCGCGATCACTTGCGCCAGGGCATCGAGAG
CGTGCCCGCCCATGGCCGCAATGGTGGCATCGCCGCGCTGGTGCTGGGAGATGGCTCGGGCGTCGACAGCGCGGACTGGC
AGTTGCTGCAGAACACCGGGACGGTTCACCTGATGGTGATTTCCGGGCAGCACGTCGCCTTGCTCGCGGCGGTGCTGTAC
GGAGCTGTGGCGTTGCTGGCCCGGCTCGGCATTTGGCCCCGACGCCTGCCGTGGTTGCCTTGTGCCTGTGCGCTGGCCTT
CGTCGGCTCGCTGGGTTACGGACTCCTCGCCGGCTTCGACGTGCCGGTGCAGCGCTCCTGCCTGATGACCGCCATCGCGC
TGCTGTGGCGCCTGCGCTTTCGTCACCTGGGCGTGCTGCGCCCGTTGCTGGTGGCCTTCTGCGTGGTGCTGGCGGCCGAT
CCGCTGGCGTCGCTGCAGGCGGGGTTCTGGTTGTCCTTCGGGGCCGTGGCATTGCTGGTGCTGATCTTCGCCGGACGCCT
GGGCGTGCCGCCCTGGTGGCGCAGTTGGTGGCGCGCGCAATGGACCATGGGCCTGGCGCTGTCGCCCTTGCTGCTGGCCA
TGGCACTGCCCATCAGCCTGAGCGGCCCGCTGGCCAACCTGGTGGCGGTGCCCTGGGTCAGTCTGGTCTCGGTGCCGCTG
TCTTTATTAGGCACGGCCCTGCAGGGCGTGCCCGGGGTGGGGGCGGGATTGCTGTGGCTGGCGGGCGGTTCGCTGGAACT
GTTGTTCCGCTTGCTGGGCTGGATAGCGGAATGGATTCCCGCCTGGCAGGCGACCGTCGTTCCCGTCTGGGCCTGGCTGC
TGGGCATACTCGGTTGCCTGCTGCTGATCGTGCCGGCCGGGATGCCGGTGCGGGCTTTGGGGTTGGCGTTGTTGTTGCCA
ACGCTGTTTCCGCCGGTGGAGCGCCCGGCCTGGGGGAGGGCGGATATCTGGTTGCTGGATGTGGGGCAGGGGCTGTCGGT
GCTGGTGCGCACGCGGGAGCACGCGCTGCTCTACGACGCTGGCGCGCGGCGGGGTGATTTCGACATGGGCGAGCGCGTGG
TGTTGCCCAGCCTGCTGGGGCTGGGTGTGCGGCGCCTGGACCAGATGCTCCTCAGTCATGCCGACAACGACCACGCGGGT
GGCGCCGGTGCCGTGATGCGTGGCATGCCGGTGGCACGGGTGGTGAGCGGCGAGCCGGAGCGCCTGCCGGCCAGCCTGGG
GGCCGAGGCCTGCCGTGACCAGGCCTGGGAATGGGACGGCGTGCGCCTGCGAACCTGGCGCTGGGAGGTCGCGCGCACCG
GCAACGACCGCTCCTGTGTGCTCAGTGTGGAGGCGCGGGGCGAGCGCATTCACCTGACCGGCGATATCGGTGCCCAGGCC
GAAGCCGCCTGGATTGCCAGTGGTGAGTCCTTGCACGCCGATTGGCTGCTGGCGCCGCACCATGGCAGCGCCAGCTCTTC
ATCGGCGGCGCTCATTGGCGCAGTGGCTCCACGTGGTGCGCTGATTACCCGCGGCAGTCACAACGCTTTCGGCCACCCAC
ACCCGACCGTGATCGCCCGTTACCGGGCGGCGGGCGCTGTAATCCACGACACGGCGGAGTCCGGTGCGCTGCTGATCCGC
CTTGGTGAAGGTGACGAGGTGCGTGGACTGCGGACCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-681)

• Competence protein (Competence) (200-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.306	97.297	0.626
comA	Ralstonia pseudosolanacearum GMI1000	36.154	100	0.381