Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSGK_RS01395 Genome accession   NZ_CP146285
Coordinates   312687..313322 (+) Length   211 a.a.
NCBI ID   WP_031287691.1    Uniprot ID   A0AAU7Y816
Organism   Pseudomonas solani strain GK13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307687..318322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSGK_RS01375 (PSGK_01375) lolD 307700..308383 (+) 684 WP_162164733.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PSGK_RS01380 (PSGK_01380) - 308385..309629 (+) 1245 WP_374980351.1 lipoprotein-releasing ABC transporter permease subunit -
  PSGK_RS01385 (PSGK_01385) - 309711..310241 (-) 531 WP_021219511.1 DUF2062 domain-containing protein -
  PSGK_RS01390 (PSGK_01390) comA 310392..312614 (+) 2223 WP_374980352.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSGK_RS01395 (PSGK_01395) exbB 312687..313322 (+) 636 WP_031287691.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSGK_RS01400 (PSGK_01400) - 313319..313759 (+) 441 WP_374980353.1 ExbD/TolR family protein -
  PSGK_RS01405 (PSGK_01405) lpxK 313759..314763 (+) 1005 WP_374980354.1 tetraacyldisaccharide 4'-kinase -
  PSGK_RS01410 (PSGK_01410) - 314805..314990 (+) 186 WP_021219506.1 Trm112 family protein -
  PSGK_RS01415 (PSGK_01415) kdsB 314990..315754 (+) 765 WP_271660508.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSGK_RS01420 (PSGK_01420) - 315754..316212 (+) 459 WP_374980355.1 low molecular weight protein-tyrosine-phosphatase -
  PSGK_RS01425 (PSGK_01425) murB 316209..317228 (+) 1020 WP_374980356.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.09 Da        Isoelectric Point: 6.7295

>NTDB_id=942482 PSGK_RS01395 WP_031287691.1 312687..313322(+) (exbB) [Pseudomonas solani strain GK13]
MWELVKAGGWMMLPIILSSIAATAIIVERLWTLRANRIAPPQLLGQVWRMVKDKQLNAQKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFSGFMDNGMANAPALAGGIGKALITTAA
GLVVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=942482 PSGK_RS01395 WP_031287691.1 312687..313322(+) (exbB) [Pseudomonas solani strain GK13]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCTATCATTCTGAGTTCCATCGCAGCCACCGCCATCATCGT
GGAGCGCCTGTGGACGCTTCGCGCCAATCGCATCGCACCGCCGCAATTGCTCGGCCAGGTGTGGCGCATGGTCAAGGACA
AGCAGCTCAACGCCCAGAAGCTCAAGGAGCTGCGTGCGTCTTCCCCGCTGGGTGAGATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCTTCCCGCGTCATCCACGAACTGGAGCGCTACCT
CAACACCCTGGGCACCATCGCCGCGATGGGCCCGCTGTTGGGCCTGTTGGGCACCGTGTTCGGCATGATCGAGATCTTCA
GCGGCTTCATGGACAACGGCATGGCCAACGCTCCGGCACTGGCTGGCGGTATTGGCAAGGCTCTGATTACCACTGCAGCG
GGCCTGGTGGTCGCTATCCCAGCGGTGTTCTTCCATCGCTTCCTGCTGCGTCGCGTCGACGAGCTGGTGGTGGCCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGACCCAGGGTGATCGTGAAGTGGACTTCGCAGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82