Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VP398_RS07525 Genome accession   NZ_CP146231
Coordinates   1583624..1584289 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   A0A219CAS9
Organism   Acinetobacter baumannii strain G20AB08     
Function   regulate competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1579992..1586380 1583624..1584289 within 0


Gene organization within MGE regions


Location: 1579992..1586380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP398_RS07505 (VP398_07505) - 1580862..1581680 (+) 819 WP_227546619.1 DUF4007 family protein -
  VP398_RS07510 (VP398_07510) - 1581673..1582050 (+) 378 Protein_1445 hypothetical protein -
  VP398_RS07515 (VP398_07515) - 1582111..1582264 (+) 154 Protein_1446 IS3 family transposase -
  VP398_RS07525 (VP398_07525) crp 1583624..1584289 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  VP398_RS07530 (VP398_07530) - 1584530..1584649 (+) 120 Protein_1449 hypothetical protein -
  VP398_RS07535 (VP398_07535) - 1584728..1585150 (+) 423 WP_001195082.1 OsmC family protein -
  VP398_RS07540 (VP398_07540) - 1585290..1586380 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=942250 VP398_RS07525 WP_000203219.1 1583624..1584289(-) (crp) [Acinetobacter baumannii strain G20AB08]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=942250 VP398_RS07525 WP_000203219.1 1583624..1584289(-) (crp) [Acinetobacter baumannii strain G20AB08]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CAS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425