Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS19_RS03105 Genome accession   NZ_CP169872
Coordinates   654492..654902 (+) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Up377     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 649492..659902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS19_RS03090 - 650481..652787 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS19_RS03095 - 652832..653605 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS19_RS03100 mazG 653717..654523 (+) 807 WP_000359485.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS19_RS03105 comEA 654492..654902 (+) 411 WP_001200146.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABUS19_RS03110 pcnB 655027..656490 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS19_RS03115 folK 656487..656969 (+) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS19_RS03120 panB 657015..657824 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS19_RS03125 panC 657828..658676 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS19_RS03130 rapZ 658699..659550 (+) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS19_RS03135 - 659547..659816 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=941964 ABUS19_RS03105 WP_001200146.1 654492..654902(+) (comEA) [Acinetobacter baumannii strain Up377]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=941964 ABUS19_RS03105 WP_001200146.1 654492..654902(+) (comEA) [Acinetobacter baumannii strain Up377]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412