Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS28_RS14800 Genome accession   NZ_CP169866
Coordinates   3064633..3065043 (-) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp779     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3059633..3070043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS14770 - 3059719..3059988 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS28_RS14775 rapZ 3059985..3060836 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS28_RS14780 panC 3060859..3061707 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS28_RS14785 panB 3061711..3062520 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS28_RS14790 folK 3062566..3063048 (-) 483 WP_000219216.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS28_RS14795 pcnB 3063045..3064508 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS28_RS14800 comEA 3064633..3065043 (-) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  ABUS28_RS14805 mazG 3065012..3065818 (-) 807 WP_000359497.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS28_RS14810 - 3065930..3066703 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS28_RS14815 - 3066748..3069054 (-) 2307 WP_000259108.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=941845 ABUS28_RS14800 WP_002017231.1 3064633..3065043(-) (comEA) [Acinetobacter baumannii strain Rp779]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=941845 ABUS28_RS14800 WP_002017231.1 3064633..3065043(-) (comEA) [Acinetobacter baumannii strain Rp779]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412