Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R8665_RS03625 Genome accession   NZ_AP028386
Coordinates   685111..687084 (-) Length   657 a.a.
NCBI ID   WP_317677233.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 680111..692084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS03610 (B11348_07030) kdpB 680521..682566 (+) 2046 WP_317677231.1 potassium-transporting ATPase subunit KdpB -
  R8665_RS03615 (B11348_07040) kdpC 682568..683176 (+) 609 WP_002856979.1 potassium-transporting ATPase subunit KdpC -
  R8665_RS03620 (B11348_07050) kdpD 683179..685116 (+) 1938 WP_317677232.1 sensor histidine kinase -
  R8665_RS03625 (B11348_07060) uvrB 685111..687084 (-) 1974 WP_317677233.1 excinuclease ABC subunit UvrB Machinery gene
  R8665_RS03630 (B11348_07070) - 687238..687468 (+) 231 WP_002852327.1 hypothetical protein -
  R8665_RS03635 (B11348_07080) - 687458..687700 (+) 243 WP_002854947.1 hypothetical protein -
  R8665_RS03640 (B11348_07090) Cj0683 687697..688134 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  R8665_RS03645 (B11348_07100) priA 688116..689969 (+) 1854 WP_079005308.1 primosomal protein N' -
  R8665_RS03650 (B11348_07110) cipA 689979..691373 (-) 1395 WP_317677234.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75966.52 Da        Isoelectric Point: 6.8371

>NTDB_id=94180 R8665_RS03625 WP_317677233.1 685111..687084(-) (uvrB) [Campylobacter jejuni strain BCH-11348]
MLELTSEFKPSSDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANIIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTNTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=94180 R8665_RS03625 WP_317677233.1 685111..687084(-) (uvrB) [Campylobacter jejuni strain BCH-11348]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTTCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATATCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTAGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCGACCAATGAAGACTTAGAGCGTTTAAGGCTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAACACAGGAATGTGTAAAGGAGTTGAAAATTATGCAAGGCATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAATATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTGATAGAATTAAAAGA
TAGTGACAACCAAGTTGAAATTTTATTTGATGAAGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACCGTGC
TAACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGACATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTGCTTAG
AGAAGGACTAGATCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACGACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACTACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATTACCCCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAACTTGTCAAAGAATTAAGAAAGCAAATGCTTGAAGCAGCAAAAGCACTTGAG
TTTGAAAAAGCTGCCGCAATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(158-246)

Type III restriction enzyme, res subunit (ResIII)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae D39

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae TIGR4

50.772

98.63

0.501

Multiple sequence alignment