Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V6657_RS10570 Genome accession   NZ_CP146091
Coordinates   2159003..2161525 (-) Length   840 a.a.
NCBI ID   WP_048934205.1    Uniprot ID   -
Organism   Ralstonia sp. RRA.1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2154003..2166525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6657_RS10550 - 2154515..2155420 (-) 906 WP_048934208.1 peptidase -
  V6657_RS10555 - 2155512..2156348 (-) 837 WP_048934320.1 transglutaminase family protein -
  V6657_RS10560 - 2156406..2157356 (-) 951 WP_048934207.1 alpha-E domain-containing protein -
  V6657_RS10565 - 2157411..2158892 (-) 1482 WP_048934206.1 circularly permuted type 2 ATP-grasp protein -
  V6657_RS10570 comA 2159003..2161525 (-) 2523 WP_048934205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6657_RS10575 - 2161535..2162347 (-) 813 WP_048934204.1 TatD family hydrolase -
  V6657_RS10580 - 2162447..2162773 (+) 327 WP_160315297.1 DUF2845 domain-containing protein -
  V6657_RS10585 lolD 2162794..2163522 (-) 729 WP_048934202.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  V6657_RS10590 - 2163515..2164765 (-) 1251 WP_048934201.1 lipoprotein-releasing ABC transporter permease subunit -
  V6657_RS10595 - 2164849..2165928 (+) 1080 WP_048934319.1 hypothetical protein -

Sequence

Protein


Download         Length: 840 a.a.        Molecular weight: 91259.51 Da        Isoelectric Point: 7.6294

>NTDB_id=941664 V6657_RS10570 WP_048934205.1 2159003..2161525(-) (comA) [Ralstonia sp. RRA.1]
MRLGLIGFVAGCVALQMQAVLMPAWQAVVVLWLCLLLAFVARRKPILLSVLLVTSASVAGFGWSDWRAQQRLSVVLSPAW
EGKDIIATGVVAELPQVTEDATRFLFQIESSNAGDAVPSRVRLSWYGTRNWGGMDEEGVEPDRRAGIPDLQPGQRWQLTL
RLKRPHSLSNPGGFDGEYAMLADDIRATGYVRTGKRAQNIALGEAEAGLGIGVERWRAAVRRHILAALPDARYATVIVAL
VVGDQSGIAREDWELFRRTGISHLVSISGLHITMIAGLFAAFWMALWRRSFGLARWLRTPLPLRMSTPRAGAIAAMLAAF
GYCLLAGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCWAAAVVAVVDPWAVMSAGFWLSFGAVAIIFLAAQMVLDGRR
NREAEGWWARYQRGFASSTRIQFAVTFGLLPLTLLLFQQTSVVSAAANGLAIPVVSFLTTPLALAGAALPDPLAQPVLTL
SEVSFRWLVVWLEWLARPSWSVWVAPVAPAWALLLATGGVALLLVPGAHRAWAWRAQGALLLVPMVLARVPVPPPGEFRM
VAFDIGQGAAALVETASHRLLFDTGPRYDDHADAAARVVTPYLRGHGVEALDTLVVSHEDSDHAGGTETVIEAVPVRTML
ASLPRGHALRETAEERDIHFTDCLAGQVWTWDEVVFEVLHPMRLPAEGERVASNARSCVLRISNGRHAALLTGDIEAPQE
AALVAGETPERLMADILLVPHHGSKTSSSGAFLDAVSPQVAVFQVGYRNRYGHPHRQVWQRYVARDIERLRTDQTGAVVI
ETHGDALEVQTARSMRPRYWSSALEVEALATAADGIDALP

Nucleotide


Download         Length: 2523 bp        

>NTDB_id=941664 V6657_RS10570 WP_048934205.1 2159003..2161525(-) (comA) [Ralstonia sp. RRA.1]
ATGCGGTTGGGGTTGATTGGGTTCGTGGCCGGGTGTGTGGCGCTGCAGATGCAGGCCGTGCTCATGCCTGCGTGGCAAGC
GGTTGTGGTGCTGTGGCTATGTCTGCTGCTTGCCTTTGTGGCGCGTCGCAAACCGATTCTGCTCTCTGTCCTGCTGGTCA
CCAGTGCTTCCGTTGCTGGCTTTGGCTGGAGCGACTGGCGCGCGCAACAGCGATTGTCTGTTGTGCTCAGCCCAGCGTGG
GAAGGCAAGGACATCATCGCAACAGGCGTGGTGGCCGAACTTCCGCAGGTCACCGAAGACGCCACGCGTTTTCTCTTCCA
GATCGAATCCAGCAATGCTGGCGACGCCGTGCCTTCTCGTGTACGCCTTTCTTGGTACGGCACACGCAACTGGGGCGGGA
TGGATGAGGAGGGCGTCGAGCCTGATCGCCGCGCCGGCATCCCCGACCTGCAGCCAGGGCAACGTTGGCAACTGACGCTG
CGGCTCAAACGCCCGCACAGCTTATCCAACCCCGGCGGTTTCGATGGCGAATACGCCATGCTCGCCGATGACATCCGCGC
CACCGGCTACGTGCGCACCGGCAAGCGCGCACAGAACATCGCGCTGGGCGAGGCCGAGGCAGGCTTGGGGATCGGCGTCG
AGCGTTGGCGCGCTGCGGTGCGGCGCCACATCCTCGCCGCATTGCCCGACGCACGGTATGCGACCGTCATCGTCGCGCTC
GTGGTGGGTGATCAGAGCGGAATCGCCCGTGAGGATTGGGAGCTGTTTCGCCGCACCGGTATCAGCCACCTCGTCAGCAT
TTCCGGTTTGCATATCACGATGATTGCCGGGTTATTTGCCGCGTTCTGGATGGCGCTATGGCGCCGTTCGTTCGGGTTGG
CACGCTGGCTGCGCACGCCGTTGCCGCTGCGTATGTCGACGCCGCGAGCAGGGGCCATCGCAGCCATGCTGGCGGCCTTC
GGCTATTGCCTGCTCGCGGGGATGGGTGTTCCCGCGCAACGCACGCTGCTGATGTTGTCGACTGTCGCGATAGCGCGGCT
GACCGATCGCAACGTGCCGGCAAGCCTGTCGCTGTGCTGGGCGGCGGCTGTGGTGGCAGTGGTCGATCCTTGGGCCGTTA
TGTCGGCCGGGTTCTGGCTGTCGTTTGGCGCGGTGGCGATCATTTTCCTGGCCGCGCAGATGGTGCTCGATGGGCGGCGC
AATCGCGAGGCGGAAGGGTGGTGGGCGCGTTACCAACGCGGGTTTGCCAGTTCGACGCGCATTCAATTTGCCGTCACGTT
TGGGTTGCTGCCGTTGACGTTGCTCCTGTTCCAGCAGACATCGGTGGTCTCGGCAGCGGCTAACGGATTGGCGATTCCGG
TGGTGAGCTTCTTGACGACACCGCTGGCGCTGGCTGGCGCAGCGTTACCCGATCCGTTGGCCCAGCCAGTGTTGACACTG
TCCGAGGTGAGCTTTCGCTGGTTGGTGGTGTGGCTTGAGTGGTTGGCGCGGCCAAGCTGGTCGGTTTGGGTTGCGCCAGT
CGCCCCCGCTTGGGCATTGCTGCTGGCGACGGGCGGTGTAGCCCTGCTACTGGTGCCGGGTGCCCATCGTGCTTGGGCAT
GGCGCGCGCAGGGCGCGTTGCTGCTTGTGCCGATGGTGCTGGCACGGGTTCCGGTGCCGCCGCCGGGCGAGTTCCGCATG
GTCGCTTTCGACATCGGCCAAGGTGCAGCCGCGCTGGTCGAGACGGCCAGCCATCGTCTCCTGTTCGATACCGGGCCACG
CTATGACGACCACGCCGACGCGGCCGCCCGTGTCGTTACACCGTACCTGCGCGGACATGGTGTGGAGGCGCTCGACACGC
TCGTCGTCAGCCACGAAGACAGCGACCATGCGGGTGGCACCGAAACGGTGATTGAGGCGGTGCCTGTGCGCACCATGTTG
GCGTCGCTGCCGCGAGGGCATGCCCTGCGCGAGACCGCTGAGGAACGCGACATCCACTTCACCGATTGCTTGGCTGGGCA
AGTATGGACGTGGGACGAGGTGGTTTTCGAAGTGCTGCATCCGATGCGGCTGCCCGCCGAAGGGGAGCGCGTGGCCAGCA
ACGCCCGCAGTTGTGTGCTGCGTATCAGCAACGGCCGGCACGCGGCGCTGTTGACCGGCGACATTGAGGCCCCCCAGGAG
GCCGCATTGGTGGCCGGTGAAACCCCGGAGCGGCTGATGGCAGACATCTTGCTAGTACCCCACCACGGCAGCAAGACAAG
CTCCAGCGGTGCGTTTTTGGACGCAGTGTCACCGCAGGTGGCGGTTTTCCAGGTCGGCTACCGCAACCGGTACGGACATC
CGCACCGCCAAGTGTGGCAGCGCTATGTGGCGCGCGACATCGAGCGGCTGCGGACCGACCAGACCGGCGCCGTCGTCATC
GAGACGCATGGCGATGCGCTGGAGGTGCAGACGGCACGGTCGATGCGGCCGCGCTACTGGTCCTCCGCGCTGGAAGTGGA
AGCCCTGGCGACAGCCGCAGACGGAATTGATGCGCTGCCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(566-762)

Competence protein (Competence)

(240-525)

Domain of unknown function (DUF4131) (DUF4131)

(24-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

74.498

100

0.751