Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V6B39_RS10510 Genome accession   NZ_CP146072
Coordinates   2311371..2313587 (+) Length   738 a.a.
NCBI ID   WP_178084406.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S2-2023-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2306371..2318587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6B39_RS10490 (V6B39_10490) - 2308208..2308834 (+) 627 WP_095021015.1 glutathione S-transferase -
  V6B39_RS10495 (V6B39_10495) - 2308968..2309900 (+) 933 WP_095003141.1 ABC transporter ATP-binding protein -
  V6B39_RS10500 (V6B39_10500) - 2309897..2310676 (+) 780 WP_095003142.1 ABC transporter permease -
  V6B39_RS10505 (V6B39_10505) - 2310722..2311237 (-) 516 WP_095003143.1 DUF2062 domain-containing protein -
  V6B39_RS10510 (V6B39_10510) comA 2311371..2313587 (+) 2217 WP_178084406.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6B39_RS10515 (V6B39_10515) exbB 2313636..2314271 (+) 636 WP_338660684.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6B39_RS10520 (V6B39_10520) - 2314268..2314696 (+) 429 WP_095003145.1 biopolymer transporter ExbD -
  V6B39_RS10525 (V6B39_10525) lpxK 2314696..2315706 (+) 1011 WP_338660640.1 tetraacyldisaccharide 4'-kinase -
  V6B39_RS10530 (V6B39_10530) - 2315728..2315913 (+) 186 WP_086796064.1 Trm112 family protein -
  V6B39_RS10535 (V6B39_10535) kdsB 2315910..2316674 (+) 765 WP_095019638.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6B39_RS10540 (V6B39_10540) murB 2316671..2317690 (+) 1020 WP_095003148.1 UDP-N-acetylmuramate dehydrogenase -
  V6B39_RS10545 (V6B39_10545) - 2317706..2318317 (+) 612 WP_338660641.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80069.93 Da        Isoelectric Point: 10.1312

>NTDB_id=941581 V6B39_RS10510 WP_178084406.1 2311371..2313587(+) (comA) [Pseudomonas bubulae strain S2-2023-2]
MYTGMFALAAGLITLRFLPGLPSAGWLLLMVTAGGLLLACRGWPVGLYVLALCWACFQGQRALDNRLADSFDGRTLWVEG
RVIGLPQQSGTSVRFELQGAKSRHGALPATIRLSWYGGPAVNSGERWRLAVKLKKPKGLLNPQGFDFEAWLLAQRIGATG
TVKQGHLQEAASHAWRDGLRQRLLRIDAQGRASWLAALVLGDGSGLSRDDWTLLQATGTVHLLVISGQHIGLFAGLIYGF
IALLARYGLWPRRLPWLPWACALAFIGATGYGVLAGFEVPVQRACMMLGLVLAWRLWFRQLGVWLPFLLALNAVLIVEPL
ASLRAGFWLSFSAVAVLLFTFSGRLGAWGWRAMWLRPHGLIALGLFPMLWILDLPISLTGPLANLIAVPWISLAVLPTAL
LGTLLLSVPWLGENLLWLSGGLIDGLVQGLSLLADVFTPWLPVSVPIYIWLLSAAGVLILLLPAGMVLRPLGWPLVLLAL
FAPREQIPRGQVEVLQLDVGQGLAIALRTRNHTLLYDAGPKSGNLDQGERVVVPVLRSLGVAELDLMLLSHADSDHAGGA
LAVQRGVSVKRVISGDVPGLAEPLRAQPCVSGETWEWDGVSFSLWQWAGASDSNQKSCVLQVQAGDERLLLTGDIDARAE
RALLQSPLGVPTRWLQAPHHGSKTSSSMVFLKALAPEIVLISRGHGNSFGHPHPQVMARYLALGVQVLDSAEQGAVKFRL
GASGKAESMRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=941581 V6B39_RS10510 WP_178084406.1 2311371..2313587(+) (comA) [Pseudomonas bubulae strain S2-2023-2]
ATGTACACAGGGATGTTTGCGCTGGCAGCGGGCCTGATCACGCTGCGGTTTTTACCTGGTTTACCGTCTGCCGGGTGGTT
GCTGCTGATGGTGACGGCGGGGGGGTTGCTATTGGCCTGCAGGGGCTGGCCGGTGGGGCTTTATGTGCTTGCGCTGTGCT
GGGCCTGCTTTCAGGGGCAAAGGGCACTGGATAACCGTCTGGCTGACTCATTCGACGGGCGTACGCTCTGGGTCGAGGGG
CGTGTGATCGGCTTGCCGCAGCAGTCTGGAACATCCGTCCGCTTTGAATTGCAGGGGGCAAAGTCGCGCCACGGTGCTTT
GCCCGCGACTATCAGGCTGAGCTGGTATGGCGGCCCTGCGGTAAACAGCGGCGAGCGCTGGCGGCTGGCGGTCAAACTCA
AGAAACCCAAAGGCTTGCTCAATCCTCAGGGGTTTGATTTTGAGGCCTGGTTACTGGCGCAGCGCATCGGTGCGACCGGT
ACGGTCAAGCAGGGGCATTTACAGGAGGCTGCCAGTCACGCCTGGCGTGACGGCTTGCGTCAGCGTCTGCTGCGCATTGA
TGCCCAGGGCCGGGCTTCGTGGTTGGCGGCGCTGGTACTGGGTGATGGATCGGGTCTGAGTCGCGATGACTGGACGTTGT
TGCAAGCGACCGGCACGGTGCATCTGCTGGTGATCTCGGGCCAGCATATTGGCCTGTTTGCCGGTTTGATCTATGGATTT
ATCGCCTTGCTGGCGCGTTATGGGCTGTGGCCACGTCGTTTGCCGTGGCTACCCTGGGCTTGTGCCCTGGCGTTTATTGG
CGCCACGGGTTACGGCGTGCTGGCGGGCTTTGAAGTGCCGGTGCAGCGCGCGTGCATGATGCTCGGACTGGTGCTGGCAT
GGCGTTTGTGGTTTCGGCAACTGGGCGTGTGGCTGCCTTTTTTGCTGGCGCTCAATGCCGTGCTGATCGTCGAGCCGCTG
GCGAGTTTACGGGCTGGGTTCTGGTTGTCATTCAGCGCCGTGGCGGTGCTTCTCTTTACCTTCAGTGGCCGCTTGGGGGC
GTGGGGGTGGCGGGCCATGTGGTTGCGCCCTCACGGCCTGATCGCCCTGGGCTTGTTCCCGATGCTGTGGATACTCGATC
TGCCCATCAGCCTGACCGGGCCGCTGGCCAATCTGATAGCCGTCCCCTGGATCAGCCTGGCAGTGCTGCCAACAGCTTTG
CTGGGGACCTTGCTGTTGTCTGTGCCCTGGCTGGGGGAAAACCTGCTGTGGCTGTCAGGTGGCCTGATCGATGGGTTGGT
CCAGGGTTTGAGCCTGCTGGCCGATGTGTTTACGCCGTGGTTGCCCGTATCCGTGCCGATTTACATTTGGCTGTTGAGTG
CGGCCGGAGTGCTGATCCTGTTGTTGCCTGCGGGGATGGTCTTGCGGCCGCTGGGTTGGCCGCTGGTGCTGCTGGCGCTG
TTTGCGCCCCGTGAACAGATCCCCCGTGGTCAGGTCGAGGTGCTGCAGCTGGATGTTGGTCAGGGTCTGGCGATTGCCTT
GCGTACCCGCAATCACACTCTGTTGTACGACGCAGGCCCCAAGTCAGGGAATCTGGATCAGGGCGAGCGGGTGGTGGTGC
CGGTTTTGCGTTCATTGGGGGTGGCCGAGCTGGATTTGATGCTGCTCAGTCACGCCGATTCGGATCATGCCGGTGGGGCG
CTGGCGGTGCAGCGGGGCGTCAGCGTGAAACGGGTGATTAGCGGCGATGTGCCGGGGCTGGCGGAGCCGTTGCGGGCGCA
ACCCTGTGTCAGTGGGGAAACTTGGGAATGGGATGGTGTGAGTTTTTCACTCTGGCAGTGGGCGGGGGCCAGCGACAGTA
ATCAAAAGTCCTGCGTGTTGCAGGTGCAGGCCGGTGATGAGCGGTTGCTGCTGACCGGGGATATCGATGCCAGGGCCGAG
CGTGCCTTGCTGCAAAGCCCGCTGGGCGTGCCTACCCGCTGGTTGCAGGCTCCTCATCACGGCAGCAAGACCTCGTCGTC
GATGGTGTTTCTCAAGGCCCTGGCGCCTGAAATCGTGCTGATCTCCCGGGGGCATGGCAATAGCTTCGGTCATCCCCATC
CACAGGTGATGGCCCGGTATCTGGCGCTGGGGGTGCAGGTACTGGACAGCGCCGAGCAGGGTGCGGTGAAGTTTCGCCTG
GGGGCGTCGGGCAAGGCTGAAAGCATGCGCGACCAACGCCGGTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-165)

Competence protein (Competence)

(198-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.414

97.425

0.569
  comA Ralstonia pseudosolanacearum GMI1000

33.881

100

0.363