Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6B39_RS10515 Genome accession   NZ_CP146072
Coordinates   2313636..2314271 (+) Length   211 a.a.
NCBI ID   WP_338660684.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S2-2023-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2308636..2319271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6B39_RS10495 (V6B39_10495) - 2308968..2309900 (+) 933 WP_095003141.1 ABC transporter ATP-binding protein -
  V6B39_RS10500 (V6B39_10500) - 2309897..2310676 (+) 780 WP_095003142.1 ABC transporter permease -
  V6B39_RS10505 (V6B39_10505) - 2310722..2311237 (-) 516 WP_095003143.1 DUF2062 domain-containing protein -
  V6B39_RS10510 (V6B39_10510) comA 2311371..2313587 (+) 2217 WP_178084406.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6B39_RS10515 (V6B39_10515) exbB 2313636..2314271 (+) 636 WP_338660684.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6B39_RS10520 (V6B39_10520) - 2314268..2314696 (+) 429 WP_095003145.1 biopolymer transporter ExbD -
  V6B39_RS10525 (V6B39_10525) lpxK 2314696..2315706 (+) 1011 WP_338660640.1 tetraacyldisaccharide 4'-kinase -
  V6B39_RS10530 (V6B39_10530) - 2315728..2315913 (+) 186 WP_086796064.1 Trm112 family protein -
  V6B39_RS10535 (V6B39_10535) kdsB 2315910..2316674 (+) 765 WP_095019638.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6B39_RS10540 (V6B39_10540) murB 2316671..2317690 (+) 1020 WP_095003148.1 UDP-N-acetylmuramate dehydrogenase -
  V6B39_RS10545 (V6B39_10545) - 2317706..2318317 (+) 612 WP_338660641.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23006.22 Da        Isoelectric Point: 6.8765

>NTDB_id=941582 V6B39_RS10515 WP_338660684.1 2313636..2314271(+) (exbB) [Pseudomonas bubulae strain S2-2023-2]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=941582 V6B39_RS10515 WP_338660684.1 2313636..2314271(+) (exbB) [Pseudomonas bubulae strain S2-2023-2]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGTCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATCTGCTCGGTCAGGTCTGGGTCTGGATCAAAGACA
AGCAAATGGACAAGGAAAAACTCAAGCAATTGCGTGCCGATTCGCCTCTGGGTGAGATTCTTGCCGCGGGCCTGGCCAAC
TCCCGTCATGGTCGCGAAATCATGAAAGAGTGCATTGAAGAGGCCGCCGCGCGCGTTATTCATGAGCTTGAGCGCTACCT
CAATACCCTGGGCACCATTGCCGCAATGGCGCCCTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGAATGACCTCCAATGCTGCGGTGCTGGCGGGTGGTATTTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATCCCGGCCGTATTCTTCCATCGTTTCCTGCAGCGTCGTATTGACGACCTGGTGGTTGGCAT
GGAGCAGGAGGCAATCAAGCTGGTTGAAGTGGTTCAGGGCGACCGTGAAGTCGATATGGTCGGGAGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839