Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V1211_RS11385 Genome accession   NZ_CP146065
Coordinates   2278042..2278554 (-) Length   170 a.a.
NCBI ID   WP_317955719.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SPS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2273042..2283554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1211_RS11345 (V1211_11355) - 2273246..2273875 (-) 630 WP_107611901.1 LysE family translocator -
  V1211_RS11350 (V1211_11360) - 2274332..2274565 (+) 234 WP_107611902.1 hypothetical protein -
  V1211_RS11355 (V1211_11365) - 2274622..2274870 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  V1211_RS11360 (V1211_11370) - 2275048..2275797 (-) 750 WP_317955725.1 amidohydrolase family protein -
  V1211_RS11365 (V1211_11375) - 2276013..2276270 (+) 258 WP_011276864.1 hypothetical protein -
  V1211_RS11370 (V1211_11380) - 2276474..2277310 (+) 837 WP_317955723.1 Ltp family lipoprotein -
  V1211_RS11375 (V1211_11385) - 2277407..2277544 (+) 138 Protein_2187 Ltp family lipoprotein -
  V1211_RS11380 (V1211_11390) rpsR 2277752..2277994 (-) 243 WP_317955721.1 30S ribosomal protein S18 -
  V1211_RS11385 (V1211_11395) ssbA 2278042..2278554 (-) 513 WP_317955719.1 single-stranded DNA-binding protein Machinery gene
  V1211_RS11390 (V1211_11400) rpsF 2278576..2278872 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  V1211_RS11395 (V1211_11405) - 2279163..2279969 (+) 807 WP_107611906.1 glycoside hydrolase family 25 protein -
  V1211_RS11400 (V1211_11410) - 2280035..2280226 (+) 192 WP_011276869.1 hypothetical protein -
  V1211_RS11405 (V1211_11415) ychF 2280370..2281467 (-) 1098 WP_037537775.1 redox-regulated ATPase YchF -
  V1211_RS11410 (V1211_11420) - 2281479..2281682 (-) 204 WP_011276871.1 DUF951 domain-containing protein -
  V1211_RS11415 (V1211_11425) - 2281704..2282585 (-) 882 WP_011276872.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18847.42 Da        Isoelectric Point: 4.7306

>NTDB_id=941498 V1211_RS11385 WP_317955719.1 2278042..2278554(-) (ssbA) [Staphylococcus haemolyticus strain SPS12]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQPDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=941498 V1211_RS11385 WP_317955719.1 2278042..2278554(-) (ssbA) [Staphylococcus haemolyticus strain SPS12]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACGTCTTACAATAACAATAATTCATCAAATAATAAACAACCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376