Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   V5M36_RS05810 Genome accession   NZ_CP145906
Coordinates   1273590..1274303 (-) Length   237 a.a.
NCBI ID   WP_338562961.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268590..1279303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS05790 (V5M36_05790) - 1269354..1270673 (+) 1320 WP_338562954.1 adenylosuccinate synthase -
  V5M36_RS05795 (V5M36_05795) - 1270928..1271233 (+) 306 WP_338564067.1 hypothetical protein -
  V5M36_RS05800 (V5M36_05800) - 1271351..1272124 (+) 774 WP_338562956.1 M48 family metallopeptidase -
  V5M36_RS05805 (V5M36_05805) - 1272329..1273378 (-) 1050 WP_338562959.1 NADP(H)-dependent aldo-keto reductase -
  V5M36_RS05810 (V5M36_05810) crp 1273590..1274303 (-) 714 WP_338562961.1 cAMP-activated global transcriptional regulator CRP Regulator
  V5M36_RS05815 (V5M36_05815) - 1274460..1274882 (+) 423 WP_338562963.1 OsmC family protein -
  V5M36_RS05820 (V5M36_05820) - 1275266..1275754 (-) 489 WP_338562965.1 rhodanese-like domain-containing protein -
  V5M36_RS05825 (V5M36_05825) epsC 1276030..1276938 (+) 909 WP_338562967.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26461.13 Da        Isoelectric Point: 4.8183

>NTDB_id=941062 V5M36_RS05810 WP_338562961.1 1273590..1274303(-) (crp) [Acinetobacter sp. KS-LM10]
MTSTFSQLSTDALSPGQLPESVKALLKRAHINRFPKRTAIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEVNPQRTAEVRTRDVCEIAEITYANFHEVSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSGQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEAGNATEEDFTETNDE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=941062 V5M36_RS05810 WP_338562961.1 1273590..1274303(-) (crp) [Acinetobacter sp. KS-LM10]
ATGACTTCTACTTTTTCACAACTTAGTACAGATGCTTTATCACCAGGTCAACTTCCTGAGTCTGTTAAAGCATTACTCAA
ACGCGCTCATATTAATCGCTTTCCTAAACGTACAGCAATTATCGATGCGGGTTCCGAGTCTAAATCTCTGTATCTAATTT
TAAAAGGGTCGGTATCAATTATTTTACGAGAAGATGATGATCGTGAAATTGTTGTTGCTTATTTGAACCCTGGGGACTTT
TTTGGGGAAATGGGTCTTTTTGAAGTAAATCCACAACGTACAGCAGAAGTTAGAACCCGTGATGTATGTGAGATTGCTGA
AATAACGTATGCAAATTTCCATGAAGTTAGTAAACAATATCCTGATTTGAGCTACGCTGTGTTCGCACAGCTGGTTCGAC
GTCTCAAAAACACCACACGTAAAGTAACAGATCTTGCTTTCATTGACGTTTCTGGCCGTATCGCTCGCTGTTTGATCGAT
CTTTCTGGTCAACCAGAAGCGATGATTTTGCCGAATGGTCGTCAAATCCGCATTACTCGCCAAGAAATTGGTCGTATTGT
GGGCTGTTCACGTGAAATGGTTGGCCGTGTTCTTAAAACACTTGAAGAACAAGGCATGATTGAAACAGACGGTAAAGCAA
TTTTAATATTTGATGCCTCTTTAGAAGCTGGTAACGCCACTGAAGAAGATTTCACCGAAACAAATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.558

98.312

0.89
  crp Vibrio cholerae strain A1552

46.829

86.498

0.405
  crp Haemophilus influenzae Rd KW20

47.179

82.278

0.388