Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V5M36_RS02775 Genome accession   NZ_CP145906
Coordinates   618544..618930 (+) Length   128 a.a.
NCBI ID   WP_338563994.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 613544..623930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS02755 (V5M36_02755) - 613813..616119 (+) 2307 WP_338561787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  V5M36_RS02760 (V5M36_02760) - 616243..616671 (-) 429 WP_338561790.1 hypothetical protein -
  V5M36_RS02765 (V5M36_02765) - 616752..617528 (-) 777 WP_338561792.1 SDR family oxidoreductase -
  V5M36_RS02770 (V5M36_02770) mazG 617649..618509 (+) 861 WP_338561794.1 nucleoside triphosphate pyrophosphohydrolase -
  V5M36_RS02775 (V5M36_02775) comEA 618544..618930 (+) 387 WP_338563994.1 ComEA family DNA-binding protein Machinery gene
  V5M36_RS02780 (V5M36_02780) pcnB 619084..620559 (+) 1476 WP_338561796.1 polynucleotide adenylyltransferase PcnB -
  V5M36_RS02785 (V5M36_02785) folK 620556..621044 (+) 489 WP_338561798.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  V5M36_RS02790 (V5M36_02790) panB 621104..621913 (+) 810 WP_338561800.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  V5M36_RS02795 (V5M36_02795) panC 621932..622780 (+) 849 WP_338561802.1 pantoate--beta-alanine ligase -
  V5M36_RS02800 (V5M36_02800) rapZ 622802..623653 (+) 852 WP_338561804.1 RNase adapter RapZ -
  V5M36_RS02805 (V5M36_02805) - 623650..623919 (+) 270 WP_338561806.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14224.19 Da        Isoelectric Point: 10.3729

>NTDB_id=941060 V5M36_RS02775 WP_338563994.1 618544..618930(+) (comEA) [Acinetobacter sp. KS-LM10]
MLSYALFSGHVMAQQFDQSYLKWKAEQKAEDERLNKADAQFYLSKPTVSNAKTNFTSKNSSVGAADKVRLNSATVAELQQ
LSGVGEKKAQAIVEYRQKNGKFKSVDELQNVKGIGPKLLEKNRARLGL

Nucleotide


Download         Length: 387 bp        

>NTDB_id=941060 V5M36_RS02775 WP_338563994.1 618544..618930(+) (comEA) [Acinetobacter sp. KS-LM10]
ATGTTGAGTTATGCCTTGTTCTCTGGTCATGTCATGGCTCAACAATTTGATCAGTCTTATCTGAAATGGAAAGCAGAGCA
GAAAGCTGAAGATGAACGTTTAAATAAAGCGGATGCTCAGTTTTACTTGTCTAAACCGACTGTAAGCAACGCAAAGACAA
ATTTTACAAGTAAAAATTCAAGTGTTGGAGCAGCTGATAAAGTCCGATTGAACTCAGCCACAGTTGCAGAACTTCAACAG
CTTAGTGGCGTGGGGGAGAAAAAAGCTCAAGCGATTGTGGAGTATCGACAAAAAAATGGAAAATTTAAATCTGTAGATGA
GCTTCAGAATGTCAAAGGCATCGGTCCTAAATTATTGGAAAAAAATCGGGCACGTCTGGGGCTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(65-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

57.627

92.188

0.531
  comEA Acinetobacter baumannii strain A118

50

100

0.5
  comEA Acinetobacter baumannii D1279779

49.219

100

0.492