Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   V6668_RS02165 Genome accession   NZ_CP145892
Coordinates   449381..450094 (+) Length   237 a.a.
NCBI ID   WP_036616668.1    Uniprot ID   A0AAN4L6C1
Organism   Paenibacillus amylolyticus strain Y5S-7     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 444381..455094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6668_RS02140 (V6668_02140) - 445089..446345 (+) 1257 WP_076319553.1 DUF445 domain-containing protein -
  V6668_RS02145 (V6668_02145) - 446431..446784 (-) 354 WP_036616662.1 YxeA family protein -
  V6668_RS02150 (V6668_02150) - 446814..447545 (-) 732 WP_338707602.1 ABC transporter permease -
  V6668_RS02155 (V6668_02155) - 447558..448307 (-) 750 WP_282319592.1 ABC transporter permease -
  V6668_RS02160 (V6668_02160) - 448307..449224 (-) 918 WP_036616824.1 ABC transporter ATP-binding protein -
  V6668_RS02165 (V6668_02165) scnR 449381..450094 (+) 714 WP_036616668.1 response regulator transcription factor Regulator
  V6668_RS02170 (V6668_02170) - 450094..451476 (+) 1383 WP_338707603.1 HAMP domain-containing sensor histidine kinase -
  V6668_RS02175 (V6668_02175) - 451753..451935 (+) 183 WP_036616672.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27063.53 Da        Isoelectric Point: 5.2460

>NTDB_id=940997 V6668_RS02165 WP_036616668.1 449381..450094(+) (scnR) [Paenibacillus amylolyticus strain Y5S-7]
MELLKNKKILIVDDEPEIREMIERFLRKEGFFRIYTAGNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGGQTIDLESAVVQRTDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPIFLLTVRGLGYKLMVQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=940997 V6668_RS02165 WP_036616668.1 449381..450094(+) (scnR) [Paenibacillus amylolyticus strain Y5S-7]
ATGGAATTATTGAAGAATAAGAAAATATTGATCGTAGATGATGAGCCCGAAATACGGGAAATGATTGAACGTTTTTTACG
GAAAGAAGGTTTTTTCCGGATCTATACGGCTGGTAACTTCGTGAATGCTTTGGCGGTATGCAGACTTGAAAAGCCGGATG
CTGCTATTCTGGATGTGATGCTTCCGGATGGAGATGGGTTCTCTCTGCTCTCTTCGATCCGGTCATTCTCGGACATGCCT
GTTCTGTTCCTGTCTGCACGTGGTGAAGATGAGGATCGACTGCTCGGTCTGGGGCTTGGAGCAGATGATTATATGGTCAA
GCCCTTTCTGCCAAGAGAGTTGATTCTCCGGCTTATGGCTATTCTGAAGCGGGTATATGCTTCCAACACAGTGGAGAGAT
TGCCTGTATTTCGTTTGGGTGGACAAACCATTGATCTGGAGAGCGCTGTTGTACAGAGGACAGACAGGGAGCTTCCATTG
ACAGCTAAGGAGCATGCCATACTGATCAAGTTGTATGAGAATCAGGGCCGAATTGTAACCAGTGATGCCCTGTGTCAAGC
CGTCTGGGGAGACGAGAGTTATGGGTATGAGAATACCCTGATGGTGCATGTTCGGCGAATCCGGGAGAAGATTGAGGAAG
ATCCATCCAAACCGATATTTCTGCTGACGGTAAGGGGACTTGGTTATAAATTGATGGTTCAGGAGTCTAGGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.218

96.624

0.485
  micA Streptococcus pneumoniae Cp1015

40.87

97.046

0.397
  vicR Streptococcus mutans UA159

40.175

96.624

0.388