Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   V6U69_RS02070 Genome accession   NZ_CP145867
Coordinates   388149..389186 (+) Length   345 a.a.
NCBI ID   WP_410534069.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 383149..394186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS02045 (V6U69_02045) - 383294..385399 (+) 2106 WP_410534066.1 AAA family ATPase -
  V6U69_RS02050 (V6U69_02050) - 385833..386609 (+) 777 WP_021143708.1 FxLYD domain-containing protein -
  V6U69_RS02055 (V6U69_02055) - 386641..386940 (-) 300 WP_060972580.1 hypothetical protein -
  V6U69_RS02060 (V6U69_02060) - 386937..387356 (-) 420 WP_211181055.1 HIT family protein -
  V6U69_RS02065 (V6U69_02065) pptA 387421..388152 (+) 732 WP_198463665.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS02070 (V6U69_02070) pptB 388149..389186 (+) 1038 WP_410534069.1 ABC transporter permease Regulator
  V6U69_RS02075 (V6U69_02075) ccrZ 389244..390035 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6U69_RS02080 (V6U69_02080) trmB 390045..390686 (+) 642 WP_410534071.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6U69_RS02090 (V6U69_02090) - 390941..392122 (-) 1182 WP_410534073.1 NAD(P)/FAD-dependent oxidoreductase -
  V6U69_RS02095 (V6U69_02095) ilvD 392235..393953 (+) 1719 WP_002891655.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39965.49 Da        Isoelectric Point: 10.5822

>NTDB_id=940770 V6U69_RS02070 WP_410534069.1 388149..389186(+) (pptB) [Streptococcus salivarius strain KSS10]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWLIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYVIFQKKAQPFYKQS
GLNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKENTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLITQIVLVLTLVQAICLFDLKF
SLILVGIMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=940770 V6U69_RS02070 WP_410534069.1 388149..389186(+) (pptB) [Streptococcus salivarius strain KSS10]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGA
TCATTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAA
ATCCGTGGGCAATCATTCTTGGCTTGCTTGTGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAA
CCTGCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTACTAGACCATGTTAAGAAGGCAACAGGACGTGCTTTTAG
ATTTTGGTTAATAGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTATGTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTGAAGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATCTTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAAGGGATTACGTCGAGTGTTAAACGTCGTGCCTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAAA
ATACCTGGTATAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCCCTA
ACGCTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTTCTTGTGGTTGTTTTTGACTACCTTTTGCTCTT
CCAGCTCACGGCGCTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTACTCAGATTGTACTTGTGCTGACTCTGGTCCAGGCTATTTGCCTCTTCGATCTTAAATTT
AGCCTGATCTTGGTTGGAATTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(4-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

98.256

99.71

0.98
  pptB Streptococcus thermophilus LMD-9

92.151

99.71

0.919