Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6U68_RS08790 Genome accession   NZ_CP145866
Coordinates   1909966..1910484 (-) Length   172 a.a.
NCBI ID   WP_410531655.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1904966..1915484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08770 (V6U68_08750) - 1906872..1907816 (+) 945 WP_004183470.1 magnesium transporter CorA family protein -
  V6U68_RS08775 (V6U68_08755) - 1907885..1908556 (+) 672 WP_002891841.1 DUF1129 domain-containing protein -
  V6U68_RS08780 (V6U68_08760) - 1908673..1909554 (+) 882 WP_410531654.1 DUF4300 family protein -
  V6U68_RS08785 (V6U68_08765) rpsR 1909685..1909924 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  V6U68_RS08790 (V6U68_08770) ssb 1909966..1910484 (-) 519 WP_410531655.1 single-stranded DNA-binding protein Machinery gene
  V6U68_RS08795 (V6U68_08775) rpsF 1910496..1910786 (-) 291 WP_038676771.1 30S ribosomal protein S6 -
  V6U68_RS08800 (V6U68_08780) - 1910991..1911944 (+) 954 WP_410531656.1 hypothetical protein -
  V6U68_RS08805 (V6U68_08785) mutY 1913112..1914263 (+) 1152 WP_410531657.1 A/G-specific adenine glycosylase -
  V6U68_RS08810 (V6U68_08790) - 1914285..1914410 (-) 126 WP_353551519.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18624.35 Da        Isoelectric Point: 4.9163

>NTDB_id=940738 V6U68_RS08790 WP_410531655.1 1909966..1910484(-) (ssb) [Streptococcus salivarius strain KSS9]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFSGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=940738 V6U68_RS08790 WP_410531655.1 1909966..1910484(-) (ssb) [Streptococcus salivarius strain KSS9]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACAGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTAGTGGATCACAACCTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36