Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   V6U68_RS08035 Genome accession   NZ_CP145866
Coordinates   1756168..1757202 (-) Length   344 a.a.
NCBI ID   WP_410532096.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1751168..1762202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08010 (V6U68_07990) ilvD 1751401..1753119 (-) 1719 WP_155222567.1 dihydroxy-acid dehydratase -
  V6U68_RS08015 (V6U68_07995) - 1753232..1754413 (+) 1182 WP_225745688.1 NAD(P)/FAD-dependent oxidoreductase -
  V6U68_RS08025 (V6U68_08005) trmB 1754668..1755309 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6U68_RS08030 (V6U68_08010) ccrZ 1755319..1756110 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6U68_RS08035 (V6U68_08015) pptB 1756168..1757202 (-) 1035 WP_410532096.1 ABC transporter permease Regulator
  V6U68_RS08040 (V6U68_08020) pptA 1757202..1757933 (-) 732 WP_198463665.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS08045 (V6U68_08025) - 1757998..1758417 (+) 420 WP_037599159.1 HIT family protein -
  V6U68_RS08050 (V6U68_08030) - 1758414..1758713 (+) 300 WP_195435440.1 hypothetical protein -
  V6U68_RS08055 (V6U68_08035) - 1758894..1759061 (-) 168 WP_162837453.1 hypothetical protein -
  V6U68_RS08060 (V6U68_08040) - 1759079..1759543 (-) 465 WP_410531607.1 hypothetical protein -
  V6U68_RS08065 (V6U68_08045) - 1759636..1760244 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  V6U68_RS08070 (V6U68_08050) - 1760262..1760387 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39819.26 Da        Isoelectric Point: 10.5384

>NTDB_id=940733 V6U68_RS08035 WP_410532096.1 1756168..1757202(-) (pptB) [Streptococcus salivarius strain KSS9]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYVIFQKKAQPFYKQSG
LNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKENTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKHLITQIVLVLTLVQAICLFDLKFS
LILVGIMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=940733 V6U68_RS08035 WP_410532096.1 1756168..1757202(-) (pptB) [Streptococcus salivarius strain KSS9]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAAATC
CGTGGGCAATCATTCTTGGCCTGCTTGTGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAACCT
GCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACGGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTATGTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAAGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATCTTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGTCGTGCCTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAAAATA
CCTGGTATAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCCCTAACG
CTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTTCCA
GCTCACAGCGCTAAAATCACACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCACTTGATTACTCAGATTGTACTTGTGCTGACTCTGGTCCAGGCTATTTGCCTCTTCGATCTTAAGTTTAGC
CTGATTTTGGTTGGAATTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

98.547

100

0.985

  pptB Streptococcus thermophilus LMD-9

92.442

100

0.924