Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   V6U68_RS08040 Genome accession   NZ_CP145866
Coordinates   1757202..1757933 (-) Length   243 a.a.
NCBI ID   WP_198463665.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752202..1762933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS08015 (V6U68_07995) - 1753232..1754413 (+) 1182 WP_225745688.1 NAD(P)/FAD-dependent oxidoreductase -
  V6U68_RS08025 (V6U68_08005) trmB 1754668..1755309 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6U68_RS08030 (V6U68_08010) ccrZ 1755319..1756110 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6U68_RS08035 (V6U68_08015) pptB 1756168..1757202 (-) 1035 WP_410532096.1 ABC transporter permease Regulator
  V6U68_RS08040 (V6U68_08020) pptA 1757202..1757933 (-) 732 WP_198463665.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS08045 (V6U68_08025) - 1757998..1758417 (+) 420 WP_037599159.1 HIT family protein -
  V6U68_RS08050 (V6U68_08030) - 1758414..1758713 (+) 300 WP_195435440.1 hypothetical protein -
  V6U68_RS08055 (V6U68_08035) - 1758894..1759061 (-) 168 WP_162837453.1 hypothetical protein -
  V6U68_RS08060 (V6U68_08040) - 1759079..1759543 (-) 465 WP_410531607.1 hypothetical protein -
  V6U68_RS08065 (V6U68_08045) - 1759636..1760244 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  V6U68_RS08070 (V6U68_08050) - 1760262..1760387 (-) 126 WP_002884447.1 hypothetical protein -
  V6U68_RS08075 (V6U68_08055) - 1760823..1762928 (-) 2106 WP_410531608.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26808.04 Da        Isoelectric Point: 4.4174

>NTDB_id=940734 V6U68_RS08040 WP_198463665.1 1757202..1757933(-) (pptA) [Streptococcus salivarius strain KSS9]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLLIVDEPF
LGLDPLAISDLIELLAEEKANGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQTFGDDSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=940734 V6U68_RS08040 WP_198463665.1 1757202..1757933(-) (pptA) [Streptococcus salivarius strain KSS9]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTCTATGAAGAGTTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAATTGGACTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTTATGATTATCTGTGCCTTTATTGTTAACCCCAGTCTTCTCATTGTTGATGAGCCCTTC
CTAGGTTTGGATCCCTTGGCGATTTCGGACTTGATTGAGCTTTTGGCTGAGGAAAAAGCGAATGGTAAGGCGATTCTCAT
GTCTACCCACGTTTTGGATTCAGCTGAAAAGATGTGTGACCGCTTTGTGATTTTGCACCATGGACAGGTCTTGGCACAGG
GAACTCTCGAGGAGCTCCGTCAGACTTTTGGCGATGATAGTGCTAGTCTTAACGATATCTACATGCAGTTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

98.765

100

0.988
  pptA Streptococcus thermophilus LMD-9

97.531

100

0.975