Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6U68_RS02050 Genome accession   NZ_CP145866
Coordinates   389374..389817 (+) Length   147 a.a.
NCBI ID   WP_410531805.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 384374..394817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02035 (V6U68_02030) gdhA 385439..386791 (+) 1353 WP_037597452.1 NADP-specific glutamate dehydrogenase -
  V6U68_RS02040 (V6U68_02035) - 387078..388619 (+) 1542 WP_410531804.1 hypothetical protein -
  V6U68_RS02045 (V6U68_02040) - 388776..389186 (+) 411 WP_002886693.1 peptide deformylase -
  V6U68_RS02050 (V6U68_02045) rcrR 389374..389817 (+) 444 WP_410531805.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U68_RS02055 (V6U68_02050) rcrP 389821..391635 (+) 1815 WP_410531806.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02060 (V6U68_02055) rcrQ 391625..393403 (+) 1779 WP_198463445.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02065 (V6U68_02060) - 393511..394134 (+) 624 WP_155222314.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17065.46 Da        Isoelectric Point: 9.3270

>NTDB_id=940700 V6U68_RS02050 WP_410531805.1 389374..389817(+) (rcrR) [Streptococcus salivarius strain KSS9]
MHGKDPFSDFREIINAIESRVQELGKVHGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHEQLLEGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=940700 V6U68_RS02050 WP_410531805.1 389374..389817(+) (rcrR) [Streptococcus salivarius strain KSS9]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAAATCATCAATGCTATAGAATCTCGCGTGCAAGAGTTAGGGAAGGT
CCACGGTGTTGAACATTTAGCCGGCCCACAAGGATTTGCTGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATCTTTA
TCAAAGATATCGAGAAAAGACTATCTATTTCCAAGTCTGTGGCTAGTAATCTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCGGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAGGCCCAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGCTATTAGAAGGCATTTCGAAAGAGGATGCTGAAACAGCTTTTCGGG
TCTTTCACCAAATTCGTAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558