Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U68_RS02055 Genome accession   NZ_CP145866
Coordinates   389821..391635 (+) Length   604 a.a.
NCBI ID   WP_410531806.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 384821..396635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02035 (V6U68_02030) gdhA 385439..386791 (+) 1353 WP_037597452.1 NADP-specific glutamate dehydrogenase -
  V6U68_RS02040 (V6U68_02035) - 387078..388619 (+) 1542 WP_410531804.1 hypothetical protein -
  V6U68_RS02045 (V6U68_02040) - 388776..389186 (+) 411 WP_002886693.1 peptide deformylase -
  V6U68_RS02050 (V6U68_02045) rcrR 389374..389817 (+) 444 WP_410531805.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U68_RS02055 (V6U68_02050) rcrP 389821..391635 (+) 1815 WP_410531806.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02060 (V6U68_02055) rcrQ 391625..393403 (+) 1779 WP_198463445.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02065 (V6U68_02060) - 393511..394134 (+) 624 WP_155222314.1 GNAT family N-acetyltransferase -
  V6U68_RS02070 (V6U68_02065) - 394284..394907 (+) 624 WP_410531807.1 GTP pyrophosphokinase family protein -
  V6U68_RS02075 (V6U68_02070) - 394909..395586 (+) 678 WP_410531808.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67029.58 Da        Isoelectric Point: 5.9416

>NTDB_id=940701 V6U68_RS02055 WP_410531806.1 389821..391635(+) (rcrP) [Streptococcus salivarius strain KSS9]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFTWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKQFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAVLMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMEDKIHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKDVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHFDHETLHNIVGYIPQKAVLFSGNITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELSEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHRELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=940701 V6U68_RS02055 WP_410531806.1 389821..391635(+) (rcrP) [Streptococcus salivarius strain KSS9]
ATGTTTAAAATTTTTAAACGTTTGACAGCAAAAGAGTTAAGCATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAATGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTACGACCCTCTTATCAACCAAGGGGACTAAGGCGTCGGATA
TTTTTACCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCCTTTGCGGGCTTTATGGCCTCAGTAGTGGTT
GGTTTCCTAGCTGCCAGAACAGCAGCAAGTTTTACAACCCGTCTTCGTGATGATATCTTCCATCAAGTTCTAGATTTTTC
GGATGCAGAGATTAAGCAATTCTCCATTCCTAGTCTTTTGACCCGCACGACAAATGATATTACCCAATTACAGATGGTAC
TGACCATGGGACTACAGGTCATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGA
AATTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCGTTCTCATGCTCTTCCTCTTAATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTACAATGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCAAATACTGATTTGACCCAAAACAACCTCTTTATCGGT
CGTTCTTTTGCTTTGCTAACACCGGTAATGACTGCTGTATCCAGCGGTTTGACACTGGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACGAAAATTGCTGGTGCCATGGAAGACAAGATCCATCTCTTCTCAG
ATATGGTTGTCTATTCGTCTTATGCCATGCAGGTTGTTATGGGGTTCATGATGATGATTGTCGTTTTCTTCCTTCTTCCA
CGTGCCGTTGTAGCAGCTGGCCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAAAGACGTGGGCACTGTCGAATTCGATGATGTTTCTTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAGGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGATTTTATGATGCCACGCAAGGAACTATCAAGGTTGACGGTGTGGATGTACGACATTTTGACCACGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAAAAGGCTGTGCTTTTCTCAGGTAATATCACGTCAAATATGACAATGGGAA
CGAGCAATAATAGTCCTCTAGATGACGCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAGGTTGCTCAAGCTGGGTCTAACTTCTCAGGTGGCCAGAAGCAACGTTTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATTTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGATCGTAAAC
TGCGTCAAGAATTGTCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCTCAACGTATCTCTACTATTATGGATGCT
GATCAAATCTTGGTACTTGATCAAGGTAAGGTTGTTGGGCAAGGAACCCACAGGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCTTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.934

100

0.68