Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6U68_RS02060 Genome accession   NZ_CP145866
Coordinates   391625..393403 (+) Length   592 a.a.
NCBI ID   WP_198463445.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 386625..398403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS02040 (V6U68_02035) - 387078..388619 (+) 1542 WP_410531804.1 hypothetical protein -
  V6U68_RS02045 (V6U68_02040) - 388776..389186 (+) 411 WP_002886693.1 peptide deformylase -
  V6U68_RS02050 (V6U68_02045) rcrR 389374..389817 (+) 444 WP_410531805.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U68_RS02055 (V6U68_02050) rcrP 389821..391635 (+) 1815 WP_410531806.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02060 (V6U68_02055) rcrQ 391625..393403 (+) 1779 WP_198463445.1 ABC transporter ATP-binding protein Regulator
  V6U68_RS02065 (V6U68_02060) - 393511..394134 (+) 624 WP_155222314.1 GNAT family N-acetyltransferase -
  V6U68_RS02070 (V6U68_02065) - 394284..394907 (+) 624 WP_410531807.1 GTP pyrophosphokinase family protein -
  V6U68_RS02075 (V6U68_02070) - 394909..395586 (+) 678 WP_410531808.1 response regulator transcription factor -
  V6U68_RS02080 (V6U68_02075) - 395600..396823 (+) 1224 WP_410531809.1 sensor histidine kinase -
  V6U68_RS02085 (V6U68_02080) pyrH 397057..397794 (+) 738 WP_002885551.1 UMP kinase -
  V6U68_RS02090 (V6U68_02085) frr 397809..398366 (+) 558 WP_002885567.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65037.01 Da        Isoelectric Point: 5.0229

>NTDB_id=940702 V6U68_RS02060 WP_198463445.1 391625..393403(+) (rcrQ) [Streptococcus salivarius strain KSS9]
MENKPKTSSYKRLKPYIKGFPIPFVLAIVGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAVKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISEEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=940702 V6U68_RS02060 WP_198463445.1 391625..393403(+) (rcrQ) [Streptococcus salivarius strain KSS9]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCCAATTCCCTTTGTCCTTGC
GATTGTTGGAGCAATTATTTCAGCAGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGGATTACACCTACCAAAATGGGGACGATTCCAGGTATTGATTTGGATAAGGTGGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTGGGTTACTTACAAAGCTTTACGGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGACAGTCATTCTCAAGGGGACACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGCTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGGTT
TGTTCTAGTAGCCTTCATCATGGGCTTCTCACAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGTTACAATGCCGCTCAAGAAAGCAGTCAAGCTTTCAAGGGG
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAATTTATCTCAGGTATTATGATGCCACTCATGATTTTCATTGG
AAACTTTGGTTACGTCATGGTCTGCTTGGTAGGTGCGGTTAAGGTAATCGACGGTAGCTTGACTATCGGTGATGTGGTAG
CCTTTATGACCTATGTTCGCATCTTCTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAATTGACAGA
TACTAAAGGTCAAGTTGTCTTTGATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGATTTTTCAGCTC
TTGCTAAGCCAGGTCAAAAGATTGCGATTGTTGGTCCGACAGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACTGTTCATGACCA
ATTTTCTATGGTGCTTCAGGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAAAACATCT
CTGAAGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTTATCACCACACTTCCAAAAGGTTATGACACT
TATTTGGATGACTCTGTGACATTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCACGTGCCCTTCTGAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCTGTTGACACCAGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCTCACCGCTTATCAACCATTCGAAATGCTGATCTTATCCTTGTGATGAAAGAT
GGGAATATTATTGAACAAGGAAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689