Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6U67_RS08585 Genome accession   NZ_CP145865
Coordinates   1879066..1879584 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain KSS8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1874066..1884584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS08565 (V6U67_08570) - 1875980..1876924 (+) 945 WP_037611177.1 magnesium transporter CorA family protein -
  V6U67_RS08570 (V6U67_08575) - 1876994..1877665 (+) 672 WP_272125608.1 DUF1129 domain-containing protein -
  V6U67_RS08575 (V6U67_08580) - 1877782..1878663 (+) 882 WP_037611176.1 DUF4300 family protein -
  V6U67_RS08580 (V6U67_08585) rpsR 1878785..1879024 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  V6U67_RS08585 (V6U67_08590) ssb 1879066..1879584 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  V6U67_RS08590 (V6U67_08595) rpsF 1879596..1879886 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  V6U67_RS08595 (V6U67_08600) - 1880107..1881060 (+) 954 WP_037611175.1 hypothetical protein -
  V6U67_RS08600 (V6U67_08605) mutY 1882228..1883379 (+) 1152 WP_084915289.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=940668 V6U67_RS08585 WP_002891844.1 1879066..1879584(-) (ssb) [Streptococcus salivarius strain KSS8]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=940668 V6U67_RS08585 WP_002891844.1 1879066..1879584(-) (ssb) [Streptococcus salivarius strain KSS8]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCGAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAGCCTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AACCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36