Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   V6U67_RS03090 Genome accession   NZ_CP145865
Coordinates   614437..615438 (+) Length   333 a.a.
NCBI ID   WP_022496011.1    Uniprot ID   A0AB33ZDI0
Organism   Streptococcus salivarius strain KSS8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 609437..620438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS03070 (V6U67_03075) smpB 610558..611022 (+) 465 WP_002885905.1 SsrA-binding protein SmpB -
  V6U67_RS03075 (V6U67_03080) - 611169..612575 (+) 1407 WP_004182928.1 Cof-type HAD-IIB family hydrolase -
  V6U67_RS03080 (V6U67_03085) - 612577..612945 (+) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  V6U67_RS03085 (V6U67_03090) - 613042..614124 (-) 1083 WP_148512751.1 M24 family metallopeptidase -
  V6U67_RS03090 (V6U67_03095) ccpA 614437..615438 (+) 1002 WP_022496011.1 catabolite control protein A Regulator
  V6U67_RS03095 (V6U67_03100) - 615498..616565 (+) 1068 WP_022496012.1 MmcQ/YjbR family DNA-binding protein -
  V6U67_RS03100 (V6U67_03105) - 616578..617693 (+) 1116 WP_037611432.1 glycerate kinase -
  V6U67_RS03105 (V6U67_03110) - 617733..618188 (-) 456 WP_002885945.1 YueI family protein -
  V6U67_RS03110 (V6U67_03115) eno 618395..619699 (+) 1305 WP_002886048.1 surface-displayed alpha-enolase -
  V6U67_RS03115 (V6U67_03120) - 619852..620037 (-) 186 WP_002886071.1 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36660.58 Da        Isoelectric Point: 5.4827

>NTDB_id=940641 V6U67_RS03090 WP_022496011.1 614437..615438(+) (ccpA) [Streptococcus salivarius strain KSS8]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSITQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=940641 V6U67_RS03090 WP_022496011.1 614437..615438(+) (ccpA) [Streptococcus salivarius strain KSS8]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTATAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGACGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCCCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTCTATAACACAGCTTGCCAAGAATAATGAAAAGGTTGCCTTTGTATC
AGGGCCACTAATTGATGATATTAATGGCAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTAGTCTTTGAAGCTAAATATAGCTATAAAGATGGCTTTGATCTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCAGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAGCTTGAAGAAAAAGATGTT
ATTCTTAATCACGGTCTTACCTTACGTCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.477

100

0.775

  ccpA Streptococcus pneumoniae D39

75.976

100

0.76

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553