Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6U67_RS02100 Genome accession   NZ_CP145865
Coordinates   401589..402032 (+) Length   147 a.a.
NCBI ID   WP_175057073.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 396589..407032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS02085 (V6U67_02090) gdhA 397660..399012 (+) 1353 WP_022496250.1 NADP-specific glutamate dehydrogenase -
  V6U67_RS02090 (V6U67_02095) - 399671..400834 (+) 1164 WP_272125950.1 hypothetical protein -
  V6U67_RS02095 (V6U67_02100) - 400991..401401 (+) 411 WP_002886693.1 peptide deformylase -
  V6U67_RS02100 (V6U67_02105) rcrR 401589..402032 (+) 444 WP_175057073.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U67_RS02105 (V6U67_02110) rcrP 402036..403850 (+) 1815 WP_272125953.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02110 (V6U67_02115) rcrQ 403840..405618 (+) 1779 WP_272125955.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02115 (V6U67_02120) - 405726..406349 (+) 624 WP_195950813.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17116.60 Da        Isoelectric Point: 9.5657

>NTDB_id=940633 V6U67_RS02100 WP_175057073.1 401589..402032(+) (rcrR) [Streptococcus salivarius strain KSS8]
MHGKDPFNEIKKFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHEQLLEGISKEDAEIAFRVFHQIHKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=940633 V6U67_RS02100 WP_175057073.1 401589..402032(+) (rcrR) [Streptococcus salivarius strain KSS8]
ATGCATGGAAAAGATCCTTTTAATGAAATCAAAAAATTCATCAATACCATGGAATCTAGAGTGCAAGAGCTAGGCAAAGC
TTACGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATCTTTA
TCAAAGATATCGAGAAAAGGCTATCTATATCTAAATCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAACGGTTTC
GTTGAATTGGTGACATCGGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAGGCCCAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGTTATTAGAAGGCATTTCGAAAGAGGATGCTGAAATAGCTTTTCGGG
TCTTTCACCAAATTCATAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.738

95.918

0.544