Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U67_RS02105 Genome accession   NZ_CP145865
Coordinates   402036..403850 (+) Length   604 a.a.
NCBI ID   WP_272125953.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397036..408850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS02085 (V6U67_02090) gdhA 397660..399012 (+) 1353 WP_022496250.1 NADP-specific glutamate dehydrogenase -
  V6U67_RS02090 (V6U67_02095) - 399671..400834 (+) 1164 WP_272125950.1 hypothetical protein -
  V6U67_RS02095 (V6U67_02100) - 400991..401401 (+) 411 WP_002886693.1 peptide deformylase -
  V6U67_RS02100 (V6U67_02105) rcrR 401589..402032 (+) 444 WP_175057073.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U67_RS02105 (V6U67_02110) rcrP 402036..403850 (+) 1815 WP_272125953.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02110 (V6U67_02115) rcrQ 403840..405618 (+) 1779 WP_272125955.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02115 (V6U67_02120) - 405726..406349 (+) 624 WP_195950813.1 GNAT family N-acetyltransferase -
  V6U67_RS02120 (V6U67_02125) - 406497..407120 (+) 624 WP_272125958.1 GTP pyrophosphokinase family protein -
  V6U67_RS02125 (V6U67_02130) - 407122..407799 (+) 678 WP_272125960.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 66983.60 Da        Isoelectric Point: 5.9436

>NTDB_id=940634 V6U67_RS02105 WP_272125953.1 402036..403850(+) (rcrP) [Streptococcus salivarius strain KSS8]
MFKIFKRLTAKELSMIILAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKQFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMEDKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKEVGAVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQEMTKLIVAQRISTIMDA
DQILVLNQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=940634 V6U67_RS02105 WP_272125953.1 402036..403850(+) (rcrP) [Streptococcus salivarius strain KSS8]
ATGTTTAAAATTTTTAAACGTTTGACAGCAAAAGAGTTAAGCATGATTATCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTACGACCCTCTTATCAACCAAGGGGACTAAGGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCAGTAGTGGTT
GGTTTCCTAGCTGCCAGAACAGCAGCAAGTTTTACAACCCGTCTTCGTGATGATATCTTCCATCAAGTTCTAGATTTTTC
GGATGCAGAGATTAAGCAATTCTCCATTCCTAGTCTTTTGACCCGCACGACAAATGATATTACCCAATTACAGATGGTAC
TGACCATGGGACTACAGGTCATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGA
AATTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTCTTCCTCTTAATTATGGTTATGCCTAA
GCAACGCTTAATTCAAACGCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTACAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAACCTCTTTATCGGT
CGTTCTTTTGCTTTGCTAACACCGGTAATGACTGCTGTATCCAGCGGTTTGACACTGGCTATTTATTGGATTGGTGCGCA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACGAAAATTGCTGGTGCCATGGAAGACAAGGTCCATCTCTTCTCAG
ATATGGTTGTCTATTCGTCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTCGTTTTCTTCCTTCTTCCA
CGTGCCGTTGTAGCAGCTGGCCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAAAGAAGTGGGCGCTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTGGCATTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACGATCAAGGTTGACGGTGTCGACGTGCGACATTATGACCATGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCTGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAGTCCTCTTGATGATGCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGTAAAGATTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAGCAACGTTTGGCTATTGC
GCGTGCCTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGACTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGCTGAAAAAACACAAGAGATGACCAAGTTGATTGTTGCCCAACGCATCTCTACTATTATGGATGCG
GACCAAATCTTGGTACTTAATCAAGGTAAGGTCGTTGGTCAAGGAACTCACAAGGAACTCTTGGCAAATAATGAGGTTTA
CCAAGAGATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(16-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.43

100

0.685