Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6U67_RS02110 Genome accession   NZ_CP145865
Coordinates   403840..405618 (+) Length   592 a.a.
NCBI ID   WP_272125955.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 398840..410618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS02090 (V6U67_02095) - 399671..400834 (+) 1164 WP_272125950.1 hypothetical protein -
  V6U67_RS02095 (V6U67_02100) - 400991..401401 (+) 411 WP_002886693.1 peptide deformylase -
  V6U67_RS02100 (V6U67_02105) rcrR 401589..402032 (+) 444 WP_175057073.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U67_RS02105 (V6U67_02110) rcrP 402036..403850 (+) 1815 WP_272125953.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02110 (V6U67_02115) rcrQ 403840..405618 (+) 1779 WP_272125955.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS02115 (V6U67_02120) - 405726..406349 (+) 624 WP_195950813.1 GNAT family N-acetyltransferase -
  V6U67_RS02120 (V6U67_02125) - 406497..407120 (+) 624 WP_272125958.1 GTP pyrophosphokinase family protein -
  V6U67_RS02125 (V6U67_02130) - 407122..407799 (+) 678 WP_272125960.1 response regulator transcription factor -
  V6U67_RS02130 (V6U67_02135) - 407813..409036 (+) 1224 WP_272125962.1 sensor histidine kinase -
  V6U67_RS02135 (V6U67_02140) pyrH 409273..410010 (+) 738 WP_002885551.1 UMP kinase -
  V6U67_RS02140 (V6U67_02145) frr 410025..410582 (+) 558 WP_002885567.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65161.11 Da        Isoelectric Point: 4.9519

>NTDB_id=940635 V6U67_RS02110 WP_272125955.1 403840..405618(+) (rcrQ) [Streptococcus salivarius strain KSS8]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASEESSQAFKE
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHAELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=940635 V6U67_RS02110 WP_272125955.1 403840..405618(+) (rcrQ) [Streptococcus salivarius strain KSS8]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATTACACCTACCAAAATGGGGACGATTCCAGGCATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTAGCT
GTTTTATATGCCATTTCAGCCATTGTGGGTTACTTACAAAGCTTTACCGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTTCCTCTTAATTATTTTGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGCTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTTTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTTATCATGGGTTTCTCACAACCCCTTTTCAAACGTCAACAAGAAAATTTGGCTAACATTAATGGAT
ATATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGTTACAATGCATCTGAAGAAAGTAGTCAAGCTTTCAAGGAG
CTTAATGATAAGCTCTATAAATCGATGTGGCAATCTCAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTACGTCATGGTCTGTCTTGTGGGAGCTATTAAGGTTATTGATGGTAGCTTGACTATTGGTGATGTGGTGG
CTTTCATGACTTATGTTCGTATTTTCTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAGCTCCAGTCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACTGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAAACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCGGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTCGATACGAATGACATGAAGCGTGAAACTGTTCATGACCA
ATTCTCAATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCCGTCGGTGTTCACCACTTCATTACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTGTCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGATGCCCC
TCTCCTTATCTTGGATGAGGCGACATCATCGGTTGATACCCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGCCGTACTTCCTTTGTTATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGCTGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688