Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   V6U66_RS08620 Genome accession   NZ_CP145864
Coordinates   1855786..1856823 (-) Length   345 a.a.
NCBI ID   WP_048790351.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1850786..1861823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS08595 (V6U66_08585) ilvD 1851058..1852776 (-) 1719 WP_014632703.1 dihydroxy-acid dehydratase -
  V6U66_RS08600 (V6U66_08590) - 1852889..1854070 (+) 1182 WP_410534460.1 NAD(P)/FAD-dependent oxidoreductase -
  V6U66_RS08610 (V6U66_08600) trmB 1854286..1854927 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6U66_RS08615 (V6U66_08605) ccrZ 1854937..1855728 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6U66_RS08620 (V6U66_08610) pptB 1855786..1856823 (-) 1038 WP_048790351.1 ABC transporter permease Regulator
  V6U66_RS08625 (V6U66_08615) pptA 1856820..1857551 (-) 732 WP_048674716.1 ABC transporter ATP-binding protein Regulator
  V6U66_RS08630 (V6U66_08620) - 1857616..1858035 (+) 420 WP_048790350.1 HIT family protein -
  V6U66_RS08635 (V6U66_08625) - 1858032..1858331 (+) 300 WP_410534462.1 hypothetical protein -
  V6U66_RS08640 (V6U66_08630) - 1858788..1859807 (-) 1020 WP_171021848.1 IS30-like element IS1139 family transposase -
  V6U66_RS08645 (V6U66_08635) - 1860151..1860360 (-) 210 Protein_1651 hypothetical protein -
  V6U66_RS08650 (V6U66_08640) - 1860404..1861480 (-) 1077 WP_410534463.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40099.58 Da        Isoelectric Point: 10.5703

>NTDB_id=940596 V6U66_RS08620 WP_048790351.1 1855786..1856823(-) (pptB) [Streptococcus salivarius strain KSS7]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWGIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQS
GLNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVNNLKRLITQIVLVLTMVQAICLFDLKF
SLILVGMMLVLSLVYLPAKLNKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=940596 V6U66_RS08620 WP_048790351.1 1855786..1856823(-) (pptB) [Streptococcus salivarius strain KSS7]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGA
TCATTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTATTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGA
ATCCGTGGGGAATCATTCTTGGCTTGCTTGTGCTTTGTCTTTTATTACCTTTCTGGGGGAATATTGCGACTTATTTAGAG
CCAGCTGATAAACATTACCTTTTGGTGAAGGAAGAAGAGGTGCTTGACCATGTTAAGAAGGCAACGGGGCGTGCTTTTAG
ATTTTGGGTAATCGTACAAAGCCTGATTTTCATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTCTGGGGAG
TTATCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCT
GGCCTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAGGGGATTACATCGAGTGTTAAACGCCGTGCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTGTTTGCCCTA
ACACTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTAGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACAGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGA
ACAATCTTAAACGCTTGATTACACAGATTGTACTTGTACTGACTATGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAATAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

96.512

99.71

0.962

  pptB Streptococcus thermophilus LMD-9

91.57

99.71

0.913