Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V6U65_RS07170 Genome accession   NZ_CP145863
Coordinates   1591214..1592707 (-) Length   497 a.a.
NCBI ID   WP_022496730.1    Uniprot ID   A0AB33Z9R9
Organism   Streptococcus salivarius strain KSS6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1586214..1597707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS07140 (V6U65_07135) - 1586343..1586720 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U65_RS07145 (V6U65_07140) - 1586725..1587423 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  V6U65_RS07150 (V6U65_07145) - 1587435..1588220 (+) 786 WP_002884628.1 hypothetical protein -
  V6U65_RS07155 (V6U65_07150) amiF 1588271..1589200 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  V6U65_RS07160 (V6U65_07155) amiE 1589193..1590278 (-) 1086 WP_410532295.1 ABC transporter ATP-binding protein Regulator
  V6U65_RS07165 (V6U65_07160) amiD 1590288..1591214 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U65_RS07170 (V6U65_07165) amiC 1591214..1592707 (-) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U65_RS07175 (V6U65_07170) amiA 1592768..1594738 (-) 1971 WP_022496731.1 peptide ABC transporter substrate-binding protein Regulator
  V6U65_RS07180 (V6U65_07175) amiA 1594920..1596890 (-) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55890.70 Da        Isoelectric Point: 10.0616

>NTDB_id=940521 V6U65_RS07170 WP_022496730.1 1591214..1592707(-) (amiC) [Streptococcus salivarius strain KSS6]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIEYYDTKELQEKAS
SVDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYAHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGDDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGIL
TFLLSLPTIALVYIIRLIGSKIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=940521 V6U65_RS07170 WP_022496730.1 1591214..1592707(-) (amiC) [Streptococcus salivarius strain KSS6]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCCGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATCGAGTACTACGACACCAAAGAGTTGCAGGAGAAAGCTAGC
TCAGTTGACAAGTCGGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGCAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GTTTCTATGCACACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACTAAGCATAAATACTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACCTATGCTGAGCAGGGTGTTC
TTGATGTTATTACACAAGGACAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAAGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGGGATCGTTCTTACTATGGTGATGACCCTTACAC
AGCTACTAAGAGTCGCTACCAGTACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTGTCAACTGGTATCTTG
ACTTTCTTGCTCTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTAAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTAATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTCCGTTTTGCACGCGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCAGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTTACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.793

100

0.988
  amiC Streptococcus thermophilus LMG 18311

96.982

100

0.97
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966