Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6U65_RS07165 Genome accession   NZ_CP145863
Coordinates   1590288..1591214 (-) Length   308 a.a.
NCBI ID   WP_022496729.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585288..1596214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS07135 (V6U65_07130) - 1585367..1586161 (-) 795 WP_002884689.1 HAD-IIB family hydrolase -
  V6U65_RS07140 (V6U65_07135) - 1586343..1586720 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U65_RS07145 (V6U65_07140) - 1586725..1587423 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  V6U65_RS07150 (V6U65_07145) - 1587435..1588220 (+) 786 WP_002884628.1 hypothetical protein -
  V6U65_RS07155 (V6U65_07150) amiF 1588271..1589200 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  V6U65_RS07160 (V6U65_07155) amiE 1589193..1590278 (-) 1086 WP_410532295.1 ABC transporter ATP-binding protein Regulator
  V6U65_RS07165 (V6U65_07160) amiD 1590288..1591214 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U65_RS07170 (V6U65_07165) amiC 1591214..1592707 (-) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U65_RS07175 (V6U65_07170) amiA 1592768..1594738 (-) 1971 WP_022496731.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34637.76 Da        Isoelectric Point: 9.7054

>NTDB_id=940520 V6U65_RS07165 WP_022496729.1 1590288..1591214(-) (amiD) [Streptococcus salivarius strain KSS6]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFINVVIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=940520 V6U65_RS07165 WP_022496729.1 1590288..1591214(-) (amiD) [Streptococcus salivarius strain KSS6]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCAGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCATTAACGTTGTTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTTGATATGATTATGATGGAAATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCAGGTTTCTGGAACATGATTTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTACCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.351

100

0.994
  amiD Streptococcus thermophilus LMG 18311

95.779

100

0.958
  amiD Streptococcus thermophilus LMD-9

95.779

100

0.958