Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6U64_RS08065 Genome accession   NZ_CP145862
Coordinates   1769615..1770058 (-) Length   147 a.a.
NCBI ID   WP_247922521.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764615..1775058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS08050 (V6U64_08050) - 1765298..1765921 (-) 624 WP_247922524.1 GNAT family N-acetyltransferase -
  V6U64_RS08055 (V6U64_08055) rcrQ 1766029..1767807 (-) 1779 WP_410532626.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS08060 (V6U64_08060) rcrP 1767797..1769611 (-) 1815 WP_410536502.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS08065 (V6U64_08065) rcrR 1769615..1770058 (-) 444 WP_247922521.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U64_RS08070 (V6U64_08070) - 1770244..1770654 (-) 411 WP_155213487.1 peptide deformylase -
  V6U64_RS08075 (V6U64_08075) - 1770812..1772353 (-) 1542 WP_410536504.1 hypothetical protein -
  V6U64_RS08080 (V6U64_08080) gdhA 1772634..1773986 (-) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17204.68 Da        Isoelectric Point: 9.5834

>NTDB_id=940463 V6U64_RS08065 WP_247922521.1 1769615..1770058(-) (rcrR) [Streptococcus salivarius strain KSS4]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKYFREAIHEQLLEGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=940463 V6U64_RS08065 WP_247922521.1 1769615..1770058(-) (rcrR) [Streptococcus salivarius strain KSS4]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCACAAGGATTTGCCGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAAGCTCGAGA
TGTCAAATATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAACAGCCTTTCGTG
TCTTTCACCAAATTCGTAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558