Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U64_RS08060 Genome accession   NZ_CP145862
Coordinates   1767797..1769611 (-) Length   604 a.a.
NCBI ID   WP_410536502.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1762797..1774611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS08040 (V6U64_08040) - 1763848..1764525 (-) 678 WP_247922525.1 response regulator transcription factor -
  V6U64_RS08045 (V6U64_08045) - 1764527..1765150 (-) 624 WP_013990132.1 GTP pyrophosphokinase family protein -
  V6U64_RS08050 (V6U64_08050) - 1765298..1765921 (-) 624 WP_247922524.1 GNAT family N-acetyltransferase -
  V6U64_RS08055 (V6U64_08055) rcrQ 1766029..1767807 (-) 1779 WP_410532626.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS08060 (V6U64_08060) rcrP 1767797..1769611 (-) 1815 WP_410536502.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS08065 (V6U64_08065) rcrR 1769615..1770058 (-) 444 WP_247922521.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U64_RS08070 (V6U64_08070) - 1770244..1770654 (-) 411 WP_155213487.1 peptide deformylase -
  V6U64_RS08075 (V6U64_08075) - 1770812..1772353 (-) 1542 WP_410536504.1 hypothetical protein -
  V6U64_RS08080 (V6U64_08080) gdhA 1772634..1773986 (-) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67021.71 Da        Isoelectric Point: 6.1418

>NTDB_id=940462 V6U64_RS08060 WP_410536502.1 1767797..1769611(-) (rcrP) [Streptococcus salivarius strain KSS4]
MFKIFKRLTTKELIMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQLVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKIHLFSDMVVYSSYAMQVVMGFMMMIIVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKEVGAVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=940462 V6U64_RS08060 WP_410536502.1 1767797..1769611(-) (rcrP) [Streptococcus salivarius strain KSS4]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAATCATGATTGTCTTAGCGGTGATTTTTGTTTGCTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCGGATATTACGACACTCTTATCAACTAAGGGAACTAAAGCGTCGGATA
TTTTTGCCTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCCTCTGTAGTGGTT
GGTTTCTTAGCTGCCAGAACAGCGGCAAGTTTTACCACCCGTCTTCGTGATGATATCTTCCATCAGGTTCTAGATTTTTC
GGATGCAGAGATCAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGCTGGTAC
TTACTATGGGGTTACAGGTTATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGG
AATTGGCTCCTAGCCTTGCTTGTTGCTGTAGCAGTGATTGCTATTCTTATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTATAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATTGGT
CGTTCTTTTGCCTTACTGACACCTGTGATGACTGCTGTATCAAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCACA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAATAAGATCCATCTTTTTTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTATTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAGCCTAAAGAGGTGGGTGCTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTGGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACACTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGGACGATCAAGGTTGACGGTGTCGATGTGCGACATTATGACCACGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCAGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAGTCCTCTTGATGATGCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAGCAACGTTTGGCTATTGC
GCGTGCTTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGATTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCTCAACGTATCTCTACTATTATGGATGCG
GACCAAATCTTGGTTCTTGATCAAGGTAAGGTCGTTGGTCAAGGAACCCACAAGGAACTCTTGGCAAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.43

100

0.685