Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6U64_RS08055 Genome accession   NZ_CP145862
Coordinates   1766029..1767807 (-) Length   592 a.a.
NCBI ID   WP_410532626.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1761029..1772807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS08025 (V6U64_08025) frr 1761065..1761622 (-) 558 WP_002885567.1 ribosome recycling factor -
  V6U64_RS08030 (V6U64_08030) pyrH 1761637..1762374 (-) 738 WP_002885551.1 UMP kinase -
  V6U64_RS08035 (V6U64_08035) - 1762611..1763834 (-) 1224 WP_129852143.1 sensor histidine kinase -
  V6U64_RS08040 (V6U64_08040) - 1763848..1764525 (-) 678 WP_247922525.1 response regulator transcription factor -
  V6U64_RS08045 (V6U64_08045) - 1764527..1765150 (-) 624 WP_013990132.1 GTP pyrophosphokinase family protein -
  V6U64_RS08050 (V6U64_08050) - 1765298..1765921 (-) 624 WP_247922524.1 GNAT family N-acetyltransferase -
  V6U64_RS08055 (V6U64_08055) rcrQ 1766029..1767807 (-) 1779 WP_410532626.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS08060 (V6U64_08060) rcrP 1767797..1769611 (-) 1815 WP_410536502.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS08065 (V6U64_08065) rcrR 1769615..1770058 (-) 444 WP_247922521.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U64_RS08070 (V6U64_08070) - 1770244..1770654 (-) 411 WP_155213487.1 peptide deformylase -
  V6U64_RS08075 (V6U64_08075) - 1770812..1772353 (-) 1542 WP_410536504.1 hypothetical protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65117.06 Da        Isoelectric Point: 4.9456

>NTDB_id=940461 V6U64_RS08055 WP_410532626.1 1766029..1767807(-) (rcrQ) [Streptococcus salivarius strain KSS4]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLDYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=940461 V6U64_RS08055 WP_410532626.1 1766029..1767807(-) (rcrQ) [Streptococcus salivarius strain KSS4]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAACTTAAAGAAATTACCAATACTATTACTG
AAGGTATCACACCTACAAAAATGGGGACGATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTGGGTTACTTACAAAGCTTTACCGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTTCCTCTTGATTATTTTGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGGTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTGGTAGCCTTCATCATGGGCTTCTCGCAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACGGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAAAGCAGTCAAGCTTTCAAGGGA
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCCCAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACTGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAAACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCGGGTCAAAAGATTGCAATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTCGATACGAATGACATGAAGCGTGAAACTGTTCATGACCA
ATTCTCAATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCCGTCGGTGTTCACCACTTCATTACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGACAGAAGCAGCTCTTGACCATTGCACGTGCGCTTCTTAAGGATGCCCC
TCTCCTTATCTTGGATGAGGCGACATCATCTGTCGACACTCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGTACTTCCTTTGTTATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.088

100

0.691